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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oat-Oat, KxO, AFLP
(Reference Set)
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Correspondences
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Maps Oat-KxO/AFLP-20
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO, AFLP [ View Map Set Info ]
Map Name: Oat-KxO/AFLP-20
Map Start: 0.00
Map Stop: 66.00
Features by Type:
16 locus
16 Total

Map Features

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Items 1 to 16 of 16.
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
e6m4-4 locus 0.00 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-22 e6m4-4 locus 96.00 () Automated name-based View Maps
Oat - Oat, CxI - Oat-CxI-23 e6m4-4 locus 0.00 () Automated name-based, Automated name-based View Maps
Xbcd421A locus 0.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xbcd421A locus 0.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd421A locus 0.00 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xbcd421A locus 34.10 () Automated name-based, Automated name-based View Maps
Xcdo1090C locus 12.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xcdo1090C locus 9.90 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xcdo1090C locus 9.90 () Automated name-based, Automated name-based View Maps
e5m5-15 locus 18.00 No other positions
Xbcd1716B locus 24.00 Oat - Oat, KxO - Oat-KxO-20 Xbcd1716B locus 23.10 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xbcd1716B locus 23.10 () Automated name-based, Automated name-based View Maps
Xumn364A locus 24.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xumn364A locus 39.60 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xumn364A locus 39.60 () Automated name-based, Automated name-based View Maps
Xisu1543A locus 28.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xisu1543A locus 36.50 () Automated name-based, Automated name-based View Maps
Xbcd1931 locus 32.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xbcd1931 locus 27.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd1931 locus 27.00 () Automated name-based, Automated name-based View Maps
Xbcd1860 locus 34.00 Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xbcd1860 locus 30.90 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd1860 locus 30.90 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xbcd1860 locus 89.40 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xbcd1860 locus 101.00 () Automated name-based, Automated name-based View Maps
Xcdo1428A locus 34.00 Oat - Oat, KxO - Oat-KxO-20 Xcdo1428A locus 17.50 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xcdo1428A locus 17.50 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo1428A locus 34.10 () Automated name-based, Automated name-based View Maps
e3m7-1b locus 42.00 No other positions
e8m3-12 locus 42.00 No other positions
e6m5-10 locus 50.00 No other positions
e1m3-12 locus 50.00 No other positions
e5m5-21 locus 50.00 No other positions
e3m7-19 locus 66.00 No other positions

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