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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, ExR
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps Secale-ExR-1
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, ExR [ View Map Set Info ]
Map Name: Secale-ExR-1
Map Start: 0.00
Map Stop: 41.40
Features by Type:
6 locus
6 Total

Map Features

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[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Rye - Rye, ExR - Secale-ExR-1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr601 locus 11.10 Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr601 locus 0.90 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr601 locus 65.20 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xpsr601 locus 45.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr601 locus 53.70 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr601 locus 76.50 () Automated name-based, Automated name-based View Maps
Xbcd1434 locus 0.00 Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xbcd1434 locus -45.60 () Automated name-based, Automated name-based View Maps
Wheat A - 1AS, T.m. G1777 x G2528 - 1AS, T.m. G1777 x G2528 Xbcd1434 locus -44.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xbcd1434 locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) - TmTa-Dubcovsky-1A Xbcd1434 locus -42.50 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xbcd1434 locus 8.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd1434 locus -86.00 () Automated name-based, Automated name-based View Maps
Xbcd927 locus 0.00 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xbcd927 locus 37.00 () Automated name-based, Automated name-based View Maps
Xuah30 locus 2.60 Rye - Rye, UC90 x E-line - Secale-UxE-6 Xuah30 locus 30.30 () Automated name-based, Automated name-based View Maps
Xbcd115 locus 29.30 Rye - Rye, UC90 x E-line - Secale-UxE-4 Xbcd115 locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3A Xbcd115 locus 90.00 () Automated name-based, Automated name-based View Maps
Xuah39 locus 41.40 No other positions

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