CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, ExR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-ExR-7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, ExR [ View Map Set Info ]
Map Name: Secale-ExR-7
Map Start: 0.00
Map Stop: 60.40
Features by Type:
15 locus
15 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 15 of 15.
Rye - Rye, ExR - Secale-ExR-7
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr129 locus 46.70 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xpsr129 locus 46.00 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-7A Xpsr129 locus 22.20 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-7R Xpsr129 locus 78.20 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R Xpsr129 locus 115.20 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr129 locus 13.90 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-7 Xpsr129 locus 79.40 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-7D Xpsr129 locus 15.65 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr129 locus 63.40 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr129 locus 84.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr129 locus 92.80 () Automated name-based, Automated name-based View Maps
Xcdo783 locus 49.90 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo783 locus -92.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, D526 x Lang - Oat, D526 x Lang Xcdo783 locus 0.20 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xcdo783 locus -3.08 () Automated name-based, Automated name-based View Maps
OpJ5A locus 0.00 No other positions
OpJ5B locus 0.00 No other positions
Xuah6 locus 9.50 No other positions
Xuah103C locus 11.30 No other positions
Xuah48 locus 17.80 Rye - Rye, UC90 x E-line - Secale-UxE-5 Xuah48 locus 100.20 () Automated name-based, Automated name-based View Maps
OpG4 locus 22.90 No other positions
Xwg516 locus 22.90 No other positions
OpR10 locus 29.80 No other positions
Xcdo786D locus 45.60 No other positions
Xwg522 locus 49.90 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xwg522 locus -32.00 () Automated name-based, Automated name-based View Maps
OpE5 locus 49.90 No other positions
Xcdo786B locus 54.40 No other positions
Xcdo786C locus 60.40 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.