CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, N6 x N2, 2004
(Reference Set)
Rye-Rye, N7 x N2, 2004
Min.
Correspondences
Align Vertically
Stack
Maps Secale-N6xN2-2004-1R Secale-N7xN2-2004-1R
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, N6 x N2, 2004 [ View Map Set Info ]
Map Name: Secale-N6xN2-2004-1R
Map Start: 0.00
Map Stop: 142.30
Features by Type:
11 locus
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Rye - Rye, N6 x N2, 2004 - Secale-N6xN2-2004-1R
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xiag95-1R locus 8.00 Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xiag95-1R locus 0.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xiag95-1R locus 0.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-1R Xiag95-1R locus 0.00 () Automated name-based, Automated name-based View Maps
Xpsr634-1R locus 56.30 Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-1R Xpsr634-1R locus 47.20 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xpsr634-1R locus 43.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xpsr634-1R locus 29.90 () Automated name-based, Automated name-based View Maps
Xiag186a-1R locus 109.00 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xiag186a-1R locus 77.20 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-1R Xiag186a-1R locus 91.80 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xiag186a-1R locus 140.20 () Automated name-based, Automated name-based View Maps
Xmwg912-1R locus 138.10 Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xmwg912-1R locus 166.30 () Automated name-based, Automated name-based View Maps
Rye - Rye, P87 x P105, 2004 - Secale-PxP-2004-1R Xmwg912-1R locus 138.40 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xmwg912-1R locus 97.00 () Automated name-based, Automated name-based View Maps
Xgwm1223-1R locus 0.00 No other positions
Xrems1303-1R locus 9.90 No other positions
Xbcd98-1R locus 27.50 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xbcd98-1R locus 13.80 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xbcd98-1R locus 6.90 () Automated name-based, Automated name-based View Maps
Xgwm752-1R locus 36.30 No other positions
Xpsr330-1R locus 61.80 Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xpsr330-1R locus 94.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xpsr330-1R locus 51.80 () Automated name-based, Automated name-based View Maps
Xpsr305-1R locus 125.30 Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xpsr305-1R locus 93.70 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xpsr305-1R locus 155.00 () Automated name-based, Automated name-based View Maps
Xwg241-1R locus 142.30 Rye - Rye, N7 x N6, 2004 - Secale-N7xN6-2004-1R Xwg241-1R locus 169.50 () Automated name-based, Automated name-based View Maps
Rye - Rye, N7 x N2, 2004 - Secale-N7xN2-2004-1R Xwg241-1R locus 101.40 () Automated name-based, Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.