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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Sugarcane-Saccharum, CU/CIBR
(Reference Set)
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Correspondences
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Maps Saccharum-CU/CIBR-13
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Sugarcane - Saccharum, CU/CIBR [ View Map Set Info ]
Map Name: Saccharum-CU/CIBR-13
Map Start: 0.00
Map Stop: 52.10
Features by Type:
10 locus
10 Total

Map Features

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Items 1 to 10 of 10.
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-13
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
SG370b locus 41.90 Sugarcane - Saccharum, Cornell - Saccharum-13 SG370b locus 12.80 () Automated name-based, Automated name-based View Maps
SG370c locus 43.30 Sugarcane - Saccharum, Cornell - Saccharum-13 SG370c locus 13.90 () Automated name-based, Automated name-based View Maps
A12.2a locus 31.10 No other positions
A12.2s locus 24.80 No other positions
CD1011B locus 52.10 No other positions
CSC052B locus 41.90 No other positions
CSR014B locus 41.90 No other positions
CSR067A locus 15.70 No other positions
CSR096C locus 40.50 No other positions
N12.3s locus 0.00 No other positions

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