CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat.Rye recombinant
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 1D.1R recombinants
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat.Rye recombinant [ View Map Set Info ]
Map Name: 1D.1R recombinants
Map Start: -113.50
Map Stop: 93.00
Features by Type:
55 locus
10 rearrangement
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 65.       of 3 | Next
Wheat ABD - Wheat.Rye recombinant - 1D.1R recombinants
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
TelR1.1 locus 89.40 No other positions
BCD1434 locus 89.40 Barley - Barley, BinMap 2005 - Hordeum-Bins-1H BCD1434 locus 6.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H BCD1434 locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat sprouting markers - Ta-Anderson-1A BCD1434 locus 0.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H BCD1434 locus 0.00 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-1D BCD1434 locus 25.90 () Automated name-based, Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-1H BCD1434 locus 0.00 () Automated name-based, Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H BCD1434 locus 1.09 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-1H BCD1434 locus 22.20 () Automated name-based, Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-1H BCD1434 locus 0.00 () Automated name-based, Automated name-based View Maps
AW1-7 locus 83.10 No other positions
AW67-2 locus 79.10 No other positions
AW50-2 locus 73.50 No other positions
AW168 locus 73.50 No other positions
AW16-5 locus 65.20 No other positions
AW15-5 locus 65.20 No other positions
AW66-3 locus 65.20 No other positions
Sec1.4 locus 65.20 No other positions
Sec1.5 locus 65.20 No other positions
KSU18 locus 65.20 No other positions
KSU19 locus 65.20 No other positions
AW73-4 locus 55.50 No other positions
5SDNA locus 55.50 No other positions
IH69 locus 55.50 No other positions
BCD98 locus 55.50 Barley - Barley consensus 2 - Barley-Consensus2-1H BCD98 locus 50.30 () Automated name-based, Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H BCD98 locus 37.64 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-1H BCD98 locus 34.57 () Automated name-based, Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H BCD98 locus 31.50 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-1H BCD98 locus 37.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H BCD98 locus 37.00 () Automated name-based View Maps
Wheat ABD - Wheat sprouting markers - Ta-Anderson-1A BCD98 locus 49.40 () Automated name-based, Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H BCD98 locus -9.60 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-1H BCD98 locus 37.00 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-8 BCD98 locus 111.70 () Automated name-based, Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H BCD98 locus 30.20 () Automated name-based, Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H BCD98 locus 49.03 () Automated name-based, Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-1H BCD98 locus 37.00 () Automated name-based View Maps
KSUG9 locus 55.50 Oat - Oat, OxT - Oat-OxT-8 KSUG9 locus 29.40 () Automated name-based, Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H KSUG9 locus 34.00 () Automated name-based, Automated name-based View Maps
IPSR688 locus 55.50 No other positions
Tri25-11 locus 25.50 No other positions
IPSR161 locus 25.50 No other positions
IPSR168 locus 25.50 No other positions
IPSR393 locus 25.50 No other positions
R173-1 locus 25.50 No other positions
R173-2 locus 25.50 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.