CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Chinese Spring x SQ1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS/SQ1-5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Chinese Spring x SQ1 [ View Map Set Info ]
Map Name: CS/SQ1-5B
Map Start: 0.00
Map Stop: 246.20
Features by Type:
40 locus
40 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 40.       of 2 | Next
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5B
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xm72p78.3-5B locus 0.00 No other positions
Xgwm234-5B locus 6.20 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm234-5B locus -0.76 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm234-5B locus 0.00 () Automated name-based, Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicocco - Tt-Oxd-QTL-5B Xgwm234-5B locus 57.30 () Automated name-based, Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5B Xgwm234-5B locus 91.60 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm234-5B locus 1.00 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm234-5B locus 1.80 () Automated name-based, Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-5B Xgwm234-5B locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm234-5B locus 38.10 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm234-5B locus -5.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-5B Xgwm234-5B locus 0.00 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5B Xgwm234-5B locus 0.00 () Automated name-based, Automated name-based View Maps
Xdupw115-5B locus 14.60 No other positions
Xwg232.2-5B locus 33.10 No other positions
Xwmc149a-5B locus 34.30 No other positions
Xpsr170(Fbpa-5B) locus 34.90 No other positions
Xpsr304-5B locus 35.40 No other positions
Xm71p77.13-5B locus 36.50 No other positions
Xm51p65.4-5B locus 45.70 No other positions
Xpsr326.2-5B locus 49.00 No other positions
Xpsr118(Ald)-5B locus 50.10 No other positions
Xbarc109-5B locus 51.20 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc109-5B locus 29.70 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xbarc109-5B locus 0.78 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xbarc109-5B locus 60.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc109-5B locus 31.40 () Automated name-based View Maps
Xwmc73-5B locus 51.20 Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xwmc73-5B locus 28.90 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xwmc73-5B locus 62.50 () Automated name-based, Automated name-based View Maps
Xm69p78YT-5B locus 51.20 No other positions
Xm49p78.3-5B locus 55.60 No other positions
Xbarc74-5B locus 56.70 Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-5B Xbarc74-5B locus 65.30 () Automated name-based, Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-5B Xbarc74-5B locus 41.20 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc74-5B locus 33.10 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B Xbarc74-5B locus 71.19 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc74-5B locus 40.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xbarc74-5B locus 0.42 () Automated name-based, Automated name-based View Maps
Xpsr725-5B locus 67.40 No other positions
Xgwm499-5B locus 75.70 Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B Xgwm499-5B locus 43.30 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm499-5B locus 0.65 () Automated name-based, Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicocco - Tt-Oxd-QTL-5B Xgwm499-5B locus 109.60 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm499-5B locus 65.70 () Automated name-based, Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicocc - Tturgidum-SSR-5B Xgwm499-5B locus 32.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm499-5B locus 75.10 () Automated name-based, Automated name-based View Maps
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-5B Xgwm499-5B locus 66.50 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm499-5B locus 45.60 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm499-5B locus 47.00 () Automated name-based View Maps
Xgwm639.2-5B locus 80.30 No other positions
Xpsp3037-5B locus 86.60 Wheat ABD - Wheat, Gale - Ta-Gale-5B Xpsp3037-5B locus 15.00 () Automated name-based, Automated name-based View Maps
Xpsr806.2-5B locus 91.00 No other positions
Xpsr120.2-5B locus 99.00 No other positions
Xm65p64.8a-5B locus 109.60 No other positions
Xpsr2021.2(Aba2)-5B locus 118.80 No other positions
Xgwm271-5B locus 122.00 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm271-5B locus 0.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm271-5B locus 112.30 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm271-5B locus 78.00 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-5B Xgwm271-5B locus 93.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.