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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Wheat ABD-Wheat, Composite, 2004
(Reference Set) 		Rye-Rye, P87 x P105
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Correspondences
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Maps Wheat-Composite2004-6D Secale-PxP-6
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
locus
qtl
traitlocus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Composite, 2004 [ View Map Set Info ]
Map Name: Wheat-Composite2004-6D
Map Start: 0.00
Map Stop: 203.00
Features by Type:
35 baccontig
137 locus
2 qtl
2 traitlocus
176 Total

Map Features

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Items 1 to 25 of 176.       of 8 | Next
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr371 locus 87.00 Rye - Rye, UC90 x E-line - Secale-UxE-6 Xpsr371 locus 66.80 () Automated name-based, Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-6R Xpsr371 locus 22.70 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr371 locus 0.70 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xpsr371 locus 5.10 () Automated name-based, Automated name-based View Maps
Xpsr627 locus 69.00 Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr627 locus 7.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr627 locus 20.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr627 locus 74.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr627 locus 7.10 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr627 locus -58.10 () Automated name-based, Automated name-based View Maps
Xgdm98-6D locus 203.00 Wheat ABD - Wheat, Synthetic x Opata, SSR- - Ta-Synthetic/Opata-SSR_D-6D Xgdm98-6D locus 141.40 () Automated name-based, Automated name-based View Maps
Xtam31 locus 87.00 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xtam31 locus -52.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xtam31 locus -3.05 () Automated name-based, Automated name-based View Maps
Xwg933 locus 92.00 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xwg933 locus 1.83 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xwg933 locus 46.00 () Automated name-based, Automated name-based View Maps
XksuD1 locus 128.00 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuD1 locus 3.46 () Automated name-based, Automated name-based View Maps
XksuE14b locus 125.00 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D XksuE14b locus 3.46 () Automated name-based, Automated name-based View Maps
Xbarc183 locus 15.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-2B Xbarc183 locus 96.70 () Automated name-based, Automated name-based View Maps
Xcfd80 locus 76.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6A Xcfd80 locus 70.10 () Automated name-based, Automated name-based View Maps
Xcfd49 locus 15.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd49 locus 0.00 () Automated name-based, Automated name-based View Maps
Xbarc173 locus 21.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xbarc173 locus 25.30 () Automated name-based, Automated name-based View Maps
Xgwm469 locus 39.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xgwm469 locus 32.40 () Automated name-based, Automated name-based View Maps
Xbarc204 locus 102.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xbarc204 locus 135.40 () Automated name-based, Automated name-based View Maps
Xcfd76 locus 89.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd76 locus 141.00 () Automated name-based, Automated name-based View Maps
Xcfd95 locus 103.00 Wheat ABD - Wheat, Nanda2419 x Wangshuibai - Ta-NxW-6D Xcfd95 locus 155.90 () Automated name-based, Automated name-based View Maps
Xcdo270A locus 77.00 Oat - Oat, KxO - Oat-KxO-2 Xcdo270A locus 11.50 () Automated name-based, Automated name-based View Maps
Xabg466 locus 12.00 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xabg466 locus -57.90 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xabg466 locus 44.00 () Automated name-based View Maps
Xabg20 locus 106.00 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xabg20 locus 0.00 () Automated name-based, Automated name-based View Maps
Xbarc273 locus 99.00 No other positions
Xbarc1121 locus 105.00 No other positions
Xcfd19a locus 69.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcfd19a locus 74.00 () Automated name-based View Maps
Xgwm55a locus 83.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xgwm55a locus 52.00 () Automated name-based View Maps
Xgwm55b locus 106.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xgwm55b locus 81.00 () Automated name-based View Maps
Xcfd213a locus 23.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xcfd213a locus 97.00 () Automated name-based View Maps
XksuE3a locus 160.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A XksuE3a locus 86.00 () Automated name-based View Maps

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