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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Forno x Oberkulmer
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Triticum-FxO-5DL
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Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Forno x Oberkulmer [ View Map Set Info ]
Map Name: Triticum-FxO-5DL
Map Start: 0.00
Map Stop: 84.00
Features by Type:
4 locus
4 Total

Map Features

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Items 1 to 4 of 4.
Wheat ABD - Wheat, Forno x Oberkulmer - Triticum-FxO-5DL
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr580-5D locus 72.00 Wheat ABD - Wheat, Gale - Ta-Gale-5D Xpsr580-5D locus 112.70 () Automated name-based, Automated name-based View Maps
Xpsr906-5D locus 0.00 Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5D Xpsr906-5D locus 0.30 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5D Xpsr906-5D locus 2.90 () Automated name-based, Automated name-based View Maps
Xglk621-5D locus 84.00 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5D Xglk621-5D locus 256.50 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Kyoto - Ta-Kyoto-5D Xglk621-5D locus 71.00 () Automated name-based, Automated name-based View Maps
Xglk558-5D locus 73.00 No other positions

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