CMap Home |  Maps |  Map Summaries |  Map Search |  Feature Search |  Matrix |  Map Sets |  Map Types |  Feature Types |  Species |  Saved links |  Help |  Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, GPW
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-GPW-5D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, GPW [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-GPW-5D
Map Start: -5.90
Map Stop: 256.00
Features by Type:
124 locus
124 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 124.       of 5 | Next
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgpw7107-5D locus 256.00 No other positions
Xcdo1373-5D locus 212.40 No other positions
Xgwm272-5D locus 209.80 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5D Xgwm272-5D locus 189.50 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5D Xgwm272-5D locus 0.88 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xgwm272-5D locus 167.10 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5D Xgwm272-5D locus 257.30 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xgwm272-5D locus 119.10 () Automated name-based View Maps
Xgpw335-5D locus 206.00 No other positions
Xgpw323-5D locus 206.00 No other positions
Xfba11-5D locus 204.50 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xfba11-5D locus 167.50 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Xfba11-5D locus 193.40 () Automated name-based View Maps
Xbcd87-5D locus 204.30 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xbcd87-5D locus 165.00 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Xbcd87-5D locus 187.60 () Automated name-based View Maps
Xgpw2323-5D locus 203.80 No other positions
Xcfd25-5D locus 203.30 No other positions
Xfba364-5D locus 196.20 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Xfba364-5D locus 183.70 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx - Ta-Synthetic/Opata-gbx-5D Xfba364-5D locus 167.10 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xfba364-5D locus 160.00 () Automated name-based View Maps
Xwmc161-5D locus 188.30 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR2-5D Xwmc161-5D locus 195.50 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xwmc161-5D locus 106.50 () Automated name-based View Maps
Xcfd226-5D locus 171.50 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5D Xcfd226-5D locus 0.88 () Automated name-based View Maps
Xfbb100-5D locus 162.40 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xfbb100-5D locus 138.60 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Xfbb100-5D locus 151.60 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR2-5D Xfbb100-5D locus 169.10 () Automated name-based View Maps
Xgpw343-5D locus 156.40 No other positions
Xcfd283-5D locus 155.30 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xcfd283-5D locus 90.20 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5D Xcfd283-5D locus 187.20 () Automated name-based View Maps
Xcfd86-5D locus 154.20 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xcfd86-5D locus 91.00 () Automated name-based View Maps
Xgdm133-5D locus 151.00 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xgdm133-5D locus 84.10 () Automated name-based View Maps
Xgpw5281-5D locus 150.40 No other positions
Xcfa2141-5D locus 134.80 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xcfa2141-5D locus 79.40 () Automated name-based View Maps
Xgpw2090-5D locus 127.20 No other positions
Xgpw5171-5D locus 127.10 No other positions
Xcfd183-5D locus 126.80 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5D Xcfd183-5D locus 80.40 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5D Xcfd183-5D locus 175.20 () Automated name-based View Maps
Xgpw5084-5D locus 126.60 No other positions
Xfba209-5D locus 125.00 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5D Xfba209-5D locus 101.30 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-5D Xfba209-5D locus 121.80 () Automated name-based View Maps
Xgpw4485-5D locus 118.40 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.