GrainGenes 2.0

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'Xmwg920' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 31 records

Query	Map	Locus	Position	Distance
Xmwg920	1AS, T.m. G1777 x G2528	XNor	-46.3	6.1
Xmwg920	1AS, T.m. G1777 x G2528	Bg	-45.6	5.4
Xmwg920	1AS, T.m. G1777 x G2528	Hg	-45.6	5.4
Xmwg920	1AS, T.m. G1777 x G2528	XksuD14	-44.9	4.7
Xmwg920	1AS, T.m. G1777 x G2528	Xbcd1434	-44.9	4.7
Xmwg920	1AS, T.m. G1777 x G2528	XGli1	-44.9	4.7
Xmwg920	1AS, T.m. G1777 x G2528	XGlu3	-44.2	4.0
Xmwg920	1AS, T.m. G1777 x G2528	Xmwg920	-40.2	0.0
Xmwg920	1AS, T.m. G1777 x G2528	Xmwg2021	-38.9	1.3
Xmwg920	1AS, T.m. G1777 x G2528	Xmwg60	-34.2	6.0
Xmwg920	1AS, T.m. G1777 x G2528	Xmwg645.1	-34.2	6.0
Xmwg920	5AS, T.m. G1777 x G2528	Xmwg920	-25.1	0.0
Xmwg920	5AS, T.m. G3116 x DV92	XNor	-50	9.5
Xmwg920	5AS, T.m. G3116 x DV92	XGsp	-48.6	8.1
Xmwg920	5AS, T.m. G3116 x DV92	Xabg497	-48.6	8.1
Xmwg920	5AS, T.m. G3116 x DV92	Xmwg920	-40.5	0.0
Xmwg920	5DS, CS x RL5406	XNor	-27.2	0.0
Xmwg920	5DS, CS x RL5406	Xmwg920	-27.2	0.0
Xmwg920	5HS, Steptoe x Morex	XGsp	-54.9	9.5
Xmwg920	5HS, Steptoe x Morex	Xmwg920	-45.4	0.0
Xmwg920	Tm-Dubcovsky-1A	XNor	-47	6.1
Xmwg920	Tm-Dubcovsky-1A	Bg	-46.3	5.4
Xmwg920	Tm-Dubcovsky-1A	Hg	-46.3	5.4
Xmwg920	Tm-Dubcovsky-1A	XksuD14	-45.6	4.7
Xmwg920	Tm-Dubcovsky-1A	Xbcd1434	-45.6	4.7

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.