GrainGenes Locus Report: POPA1_0228

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Locus	POPA1_0228  [ Marker Report ]
Type	SNP
Synonym	Synonym 12_10228
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 129.41 Hordeum-OPA123-2008-5H 129.41 Hordeum-OPAConsensus-2011-5H 121.67 Hordeum-OWB-OPA2008-5H 154.045
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_14089
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0228 Marker name in barley OPA1 = 12_10228 Original SNP name = 211-1181 Most representative HarvEST:Barley Assembly #32 Unigene = 211 Most representative HarvEST:Barley Assembly #35 Unigene = 14089 HarvEST Unigene 35 Probe Set = Contig314_at; HA18O08r_s_at Unigene 35 Rice Locus = LOC_Os03g44150 Marker name in barley OPA2 = 12_10228 HarvEST Unigene 35 Probe Set = Contig314_at, HA18O08r_s_at Description for best rice BLAST hit to Unigene 35 member = protein ornithine aminotransferase, putative, expressed; E value = 0 BLAST hit in the rice genome = ornithine aminotransferase, putative, expressed