GrainGenes Locus Report: POPA1

GrainGenes Tools GrainGenes Database (the new MySQL version or the classic ACEDB one), sequence searches, map viewers.

Browse GrainGenes

Quick Queries

GBrowseBarley Bin Map
GrainMaps
Rice chromosomes vs. cereal genes
Wheat Physical EST Maps

Species PortalsData focused on individual crop species.

Avena Ave.

Barley Blvd.

Query Data Types Datasets of particular interest in GrainGenes SQL.

Maps An organized, annotated table of contents of the GrainGenes maps.

Genetic MarkersProbes, primers and genes, with links to mapped locations.

Sequences

QTLs

Gene ExpressionSequences from the Barley1 GeneChip, with links to BarleyBase.

Colleagues

Web ResourcesBesides the Database, the GrainGenes Website includes a large array of other data resources, classified by topic here. See also the "Search Website" button above.

Links to related sites

User ServicesJob openings, conference announcements, how to contribute your data, joining the grains mailgroup, ...

Database Information How to join the grains mailgroup.
About the GrainGenes Website and Database.

Query (optional)

in Class

GrainGenes Locus Report: POPA1_0522

[ Printable Version ] [ Submit comment/correction ]

Locus

POPA1_0522 [ Marker Report ]

Type

SNP

Synonym

Synonym

11_10522

Chromosome

Chromosome Arm

1HL

Map

Hordeum-OPA-2009-1H	99.19
Hordeum-OPA123-2008-1H	99.19
Hordeum-OPAConsensus-2011-1H	101.34

[ Show Nearby Loci ]

Map Data

Barley, OPA 2009, Consensus

Barley, OPA 2011, Consensus

Barley, OPA123-2008, Consensus

Probe

HAR35_16343

Reference

Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.

Data Source

Close, Timothy J.

Remark

Marker name in barley Pilot OPA1 = 1_0522

[ Show all 10 ]


GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.