GrainGenes Locus Report: POPA1_1202

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Locus	POPA1_1202  [ Marker Report ]
Type	SNP
Synonym	Synonym 12_11202
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 73.75 Hordeum-OPA123-2008-7H 73.75 Hordeum-OPAConsensus-2011-7H 70.21 Hordeum-OWB-OPA2008-7H 74.094
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_17289
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_1202 Marker name in barley OPA1 = 12_11202 Original SNP name = ABC08467-1-1-92 Most representative HarvEST:Barley Assembly #32 Unigene = 5834 Most representative HarvEST:Barley Assembly #35 Unigene = 17289 HarvEST Unigene 35 Probe Set = Contig8466_at; Contig8466_s_at; Contig8467_at; Contig8467_x_at Unigene 35 Rice Locus = LOC_Os06g21140 Description for best rice BLAST hit to Unigene 35 member = glycine-rich cell wall structural protein precursor, putative, expressed; E value = 1E-50 Marker name in barley OPA2 = 12_11202 HarvEST Unigene 35 Probe Set = Contig8466_at, Contig8466_s_at, Contig8467_at, Contig8467_x_at Description for best rice BLAST hit to Unigene 35 member = protein glycine-rich cell wall structural protein precursor, putative, expressed; E value = 1E-50 BLAST hit in the rice genome = glycine-rich cell wall structural protein precursor, putative, expressed