GrainGenes Locus Report: POPA3_1276

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Locus	POPA3_1276  [ Marker Report ]
Type	SNP
Synonym	Synonym 12_31276
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 27.35 Hordeum-OPA123-2008-1H 27.35 Hordeum-OPAConsensus-2011-1H 25.5 Hordeum-OWB-OPA2008-1H 37.626
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_19740
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_1276 Marker name in barley OPA1 = 12_31276 Original SNP name = U35_19740_954 Most representative HarvEST:Barley Assembly #32 Unigene = 10500 Most representative HarvEST:Barley Assembly #35 Unigene = 19740 HarvEST Unigene 35 Probe Set = Contig13632_at Unigene 35 Rice Locus = LOC_Os09g04339 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-41 Marker name in barley Pilot OPA3 = 3_1276 Marker name in barley OPA2 = 12_31276 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-41 BLAST hit in the rice genome = expressed protein