GrainGenes Marker Report: CDO344

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Locus	CDO344
Type	RFLP
Chromosome	7 (5H)
Map	Hordeum-TxE-5H 117.7 Oat-KxO/2003-30 11.6 Rice-CU-12 28.4
	[ Show Nearby Loci ]
Map Data	Barley, TxE Oat, KxO, 2003 Rice, BxOl
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Remark	Marker placement value = 2.68 cM on map Oat-KxO/2003-30 Marker is not a framework marker on map Oat-KxO/2003-30
Possible Orthologs	CDO344a CDO344b CDO344c Xcdo344
Probe	CDO344
Locus	CDO344c [ Show all 9 ]
Synonym	Synonym HAR35_3506   HAR35_3507
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library
Type	cDNA
Sequence	BE439129 CDO344_WHE2D0122 AA231910 AA231648
Polymorphism	CDO344 EcoRI
Source Species	Avena sativa
Source Germplasm	Brooks CIav9260
Source Tissue	etiolated leaf
PCR size	1.3
Clone Vector	pBluSK
Excision Enzyme	EcoRI XhoI
Vector PCR primers	M13forward M13reverse
Vector Amplification	94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic	Ampicillin
Clone Location	Sorrells, Mark E. GrainGenes Probe Repository
Clone Authority	Sorrells, Mark E.
Image	CDO344 BROWS autoradiogram CDO344 KO autoradiogram
Data Source	Sorrells, Mark E. 96.07
Locus for Probe	CDO344a
Type	RFLP
Map	Oat-OxT-16 87.5 Zea-Ahn-3 64.8
	[ Show Nearby Loci ]
Map Data	Maize, TxCM Oat, OxT
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Possible Orthologs	CDO344 CDO344b CDO344c Xcdo344
Locus for Probe	CDO344b
Type	RFLP
Map	Oat-OxT-16 101.2 Zea-Ahn-4 5.8
	[ Show Nearby Loci ]
Map Data	Maize, TxCM Oat, OxT
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Possible Orthologs	CDO344 CDO344a CDO344c Xcdo344
Locus for Probe	CDO344c
Type	RFLP
Map	Oat-OxT-2 40 Zea-Ahn-1 97.2
	[ Show Nearby Loci ]
Map Data	Maize, TxCM Oat, OxT
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Possible Orthologs	CDO344 CDO344a CDO344b Xcdo344
Locus for Probe	Xcdo344
Type	RFLP
Map	Avena-Sorrells-F 55.3 Oat-KxO-30 2.9
	[ Show Nearby Loci ]
Map Data	Diploid Oat, Cornell2 Oat, KxO
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Image	CDO344 KO autoradiogram
Possible Orthologs	CDO344 CDO344a CDO344b CDO344c
Locus for Probe	Xcdo344-5A
Type	RFLP
Chromosome	5A
Chromosome Arm	5AS
Map	Ta-Physical-Sarma-5A -0.87
	[ Show Nearby Loci ]
Breakpoint Interval	5AS3-0.75-0.98
Map Data	Wheat, Physical, Group 5
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Locus for Probe	Xcdo344-5B
Type	RFLP
Chromosome	5B
Chromosome Arm	5BS
Map	Ta-Physical-Sarma-5B -0.9
	[ Show Nearby Loci ]
Breakpoint Interval	5BS6-0.81-1.00
Map Data	Wheat, Physical, Group 5
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Locus for Probe	Xcdo344-5D
Type	RFLP
Chromosome	5D
Chromosome Arm	5DS
Map	Ta-Physical-Sarma-5D -0.89
	[ Show Nearby Loci ]
Breakpoint Interval	5DS2-0.78-1.00
Map Data	Wheat, Physical, Group 5
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)
Locus for Probe	Xcdo344u
Type	RFLP
Chromosome	1R
Chromosome Arm	1RS
Map	Secale-UxE-1 33.4
	[ Show Nearby Loci ]
Map Data	Rye, UC90 x E-line
Probe	CDO344
Homology	T51240 e-value: 1e-29 scarecrow-like protein 9 [imported] - Arabidopsis thaliana (fragment)