GrainGenes Marker Report: CDO542

[ Printable Version ]  [ Submit comment/correction ]

Locus	CDO542
Type	RFLP
Synonym	Synonym CDO542
Chromosome	4A 4B 4D 4H
Chromosome Arm	4DS
Map	Hordeum-Bins-4H 21 [ Show all 13 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 14 ]
Species	Hordeum vulgare
Probe	CDO542
Homology	AC087181_5 e-value: 3e-24 (AC087181) putative CCAAT displacement protein [Oryza sativa] AC087181_5 e-value: 1e-43 (AC087181) putative CCAAT displacement protein [Oryza sativa]
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin [ Show all 6 ]
Possible Orthologs	Xcdo542
Probe	CDO542
Locus	Xcdo542 CDO542 CDO542-4H
Synonym	Synonym HAR35_22993   HAR35_34915
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439077 BE439143 CDO542_WHE2H0121 CDO542_WHE2H0122
Polymorphism	CDO542 EcoRI
Linkage Group	4S
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks CIav9260
Source Tissue	etiolated leaf
Insert Size	1.2
PCR size	1.2
Clone Vector	pBluSK
Excision Enzyme	EcoRI XhoI
Vector PCR primers	M13forward M13reverse
Vector Amplification	94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic	Ampicillin
Clone Location	Sorrells, Mark E. GrainGenes Probe Repository
Clone Authority	Sorrells, Mark E.
Image	CDO542 BROWS autoradiogram CDO542 KO autoradiogram
Data Source	Sorrells, Mark E. 96.07 ATMI 92.09
Locus for Probe	CDO542-4H
Map	Hv-DxR-Stein-4H 33.57
	[ Show Nearby Loci ]
Map Data	Barley, OWB, Stein2006
Probe	CDO542
Homology	AC087181_5 e-value: 3e-24 (AC087181) putative CCAAT displacement protein [Oryza sativa] AC087181_5 e-value: 1e-43 (AC087181) putative CCAAT displacement protein [Oryza sativa]
Locus for Probe	Xcdo542
Type	RFLP
Map	Avena-Sorrells-E 42.4 Oat-KxO-22 49.7 Oat-KxO/AFLP-22 66 Oat-KxO/Q-22 49.7
	[ Show Nearby Loci ]
In QTL	Groat percentage, KxO-22 Height, KxO-22-b Height, KxO-22-c Height, KxO-22-g
Map Data	Diploid Oat, Cornell2 Oat, KxO Oat, KxO, AFLP Oat, KxO/QTL
Probe	CDO542
Homology	AC087181_5 e-value: 3e-24 (AC087181) putative CCAAT displacement protein [Oryza sativa] AC087181_5 e-value: 1e-43 (AC087181) putative CCAAT displacement protein [Oryza sativa]
Image	CDO542 KO autoradiogram
Reference	Jin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs	CDO542