GrainGenes Marker Report: Kap (Hordeum)

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Gene	Kap (Hordeum)
Full Name	Hooded lemma
Synonym	Synonym K   K/K^e^/k (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..
Gene Class	Hooded/elevated hooded/awned lemma
Allele	Kap (Hordeum) kap (Hordeum)
Locus	HvKNOX3 Kap X83518
Reference	Mueller KJ et al. (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron Nature 347:727-730.
URL	http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=Kap+(Hordeum)
Gene Product	Knox3
Chromosome	4H
Clone	HvKNOX3
Sequence	X83518
Image	Barley, kap (awned) phenotype [ Show all 7 ]
BGS Photo	BGS152a, Hooded lemma  [ BGS Database ] BGS152b, Hooded lemma  [ BGS Database ] BGS152c, Hooded lemma  [ BGS Database ]
Data Source	Franckowiak, Jerome D. 96.10
Locus Associated with Gene	HvKNOX3
Type	Gene IFLP Microsatellite STS
Synonym	Synonym Kap (Hordeum)
Chromosome	4H 4H + 7H
Map	Hordeum-Consensus2005-SNP-4H 35.812 [ Show all 12 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 12 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Integrated, Marcel 2009 Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP
Species	Hordeum vulgare
Probe	hvKnox 3B/3C HvKNOX3
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Image	PCR of Hvknox3 in the OWBs
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. [ Show all 8 ]
Remark	[ Hide all but 1 of 9 ] Assigned to a barley chromosome by PCR screening of wheat barley addition lines Number of populations contributing to the placement of HvKNOX3 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (AG)10 Developing laboratory = SCRI (R. Waugh) hvknox3 was mapped as an intron fragment length polymorphism (IFLP), detecting a 305-bp duplication in intron 4 of the Knox3 homeobox gene. This duplication gives rise to the Hooded mutation.
Locus Associated with Gene	Kap
Type	Gene
Map	Hordeum-Bins-4H 29 Hordeum-Genes2-4H 33
	[ Show Nearby Loci ]
Map Data	Barley genes 2 Barley, BinMap 2005
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
BGS Photo	BGS152a, Hooded lemma  [ BGS Database ] BGS152b, Hooded lemma  [ BGS Database ] BGS152c, Hooded lemma  [ BGS Database ]
Data Source	Kleinhofs, Andris
Remark	BGN 26 description: http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=Kap+(Hordeum) This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Locus Associated with Gene	X83518
Map	Hordeum-Bins-4H 30
	[ Show Nearby Loci ]
Map Data	Barley, BinMap 2005
Associated Gene	Kap (Hordeum)
Gene Class	Hooded/elevated hooded/awned lemma
Reference	Muller KJ et al. (1995) The barley Hooded mutation caused by a duplication in a homeobox gene intron Nature 374:727-730.
Remark	The X83518 RFLP/STS is a gene marker for the Kap (Hordeum) gene
Locus	Kap (Hordeum)
Synonym	Synonym HvKNOX3