GrainGenes Marker Report: POPA2_1462

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Locus	POPA2_1462
Type	SNP
Synonym	Synonym 12_21462   PSR79
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 151.36 Hordeum-OPA123-2008-5H 151.36 Hordeum-OPAConsensus-2011-5H 143.29 Hordeum-OWB-OPA2008-5H 179.39
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_14832
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1462 Marker name in barley OPA1 = 12_21462 Original SNP name = ABC02249-1-1-321 Most representative HarvEST:Barley Assembly #32 Unigene = 1537 Most representative HarvEST:Barley Assembly #35 Unigene = 14832 HarvEST Unigene 35 Probe Set = Contig2249_at; HVSMEb0013I11r2_s_at Unigene 35 Rice Locus = LOC_Os03g57200 Marker name in barley Pilot OPA2 = 2_1462 Marker name in barley OPA2 = 12_21462 HarvEST Unigene 35 Probe Set = Contig2249_at, HVSMEb0013I11r2_s_at Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase parA, putative, expressed; E value = 1E-87 BLAST hit in the rice genome = glutathione S-transferase parA, putative, expressed
Probe for Locus	HAR35_14832
Locus	POPA2_1462 POPA1_0119
Synonym	Synonym PSR79
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare
Data Source	Close, Timothy J