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GrainGenes Marker Report: Pcr2

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Locus
Pcr2
Type
RFLP
Synonym
SynonympHvDF1
Chromosome
1H
Chromosome Arm
1HL
Map
[ Hide all but 1 of 14 ]
Barley-Consensus-1H13.3
Barley-Consensus2-1H74.1
Hordeum-Consensus2005-SNP-1H69.185
Hordeum-Consensus2007-SSR-1H61.52
Hordeum-Genes-1H15
Hordeum-NABGMP1-1H63.1
Hordeum-OPA-2009-1H74.4
Hordeum-PilotOPA1-1H58.75
Hordeum-QTLConsensus-Abiotic-1H69.19
Hordeum-QTLConsensus-Agronomic-1H69.19
Hordeum-StMo-SNP-1H75.81
Hordeum-SxM-FeedQTL-1H63.1
Hv-Consensus2006-Marcel-1H61.52
Hv-Integrated2009-1H61.6
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Species
Hordeum vulgare
Probe
pHvDF1
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J. 
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'



Probe for Locus
pHvDF1
Locus
Pcr2
Pcr1
Pcr2-1H
Reference
ReferenceSchulz R et al. (1989) Nucleotide sequence of a complementary DNA coding for the NADPH-protochlorophyllide oxidoreductase PCR of barley Hordeum-vulgare L. and its expression in Escherichia-coli Molecular and General Genetics 217:355-361.
ReferenceSteinmuller K et al. (1986) The light-induced greening of barley Molecular Form and Function of the Plant Genome 83:277-290.
ReferenceApel K et al. (1983) The light-dependent control of chloroplast development in barley (Hordeum vulgare L.) Journal of Cellular Biochemistry 23:181-189.
Type
cDNA
Linkage Group
2
Source Gene Class
NADPH protochlorophyllide oxidoreductase
Source Gene
Pcr1 (Hordeum)
Source Species
Hordeum vulgare
Insert Size
0.524
0.6
Clone Vector
pBR
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Apel, K.
Data Source
Kleinhofs, Andris96.05.08
Information Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..

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