Reserved Laboratory Designators for DNA Probes, Primers and Markers
Katrien
M. Devos (kdevos@uga.edu)
Jorge
Dubcovsky (jdubcovsky@ucdavis.edu)
Last
update November 2007
Symbols for wheat DNA-markers of unknown function include a 'laboratory designator' which, along with a number, identifies the DNA clone or primer(s) used to detect the locus. The designator is chosen either by the laboratory that produced the clone or designed the primer(s) or, if that laboratory chooses not to do so, then by the laboratory that mapped the locus. It should consist of from two to four and preferably three letters that are chosen carefully to insure that they differ both from those used by other laboratories and from those that compose gene symbols.
This file was compiled to assist investigators who wish to identify laboratory designators that have already been used. It consists of two parts, (1) a list of laboratory designators (in alphabetical order) and the name of the investigator(s) who assigned each designator and (2) a list of investigators (in alphabetical order), their addresses, and the designator(s) assigned by them. Wheat laboratory designators may consist of upper and/or lower-case letters, except in locus symbols, where only lower-case letters are used. In this file, designators are shown in lower-case letters only. The name of the individual, institution, or species that is the source of the acronym that composes the designator, when listed, is indicated with an asterisk (*).
The information in this file was compiled from the literature and from contacts with individual investigators. Most, but undoubtedly not all, of the designators that have been assigned to wheat loci to date are listed. Researchers are urged to report errors, unlisted laboratory designators that are already in use, and newly-chosen designators to either Katrien M. Devos or Jorge Dubcovsky (see above for e-mail addresses) so that this file may be revised accordingly. Investigators who wish to choose a new laboratory designator should consult the section entitled 'Guidelines for Nomenclature of Biochemical/Molecular Loci in Wheat and Related Species' in the "Catalogue of Gene Symbols for Wheat - 1998 edition", http://wheat.pw.usda.gov/ggpages/wgc/98. See especially paragraph '5.1 DNA markers of unknown function' and paragraph '5.6 Laboratory designators'.
|
LABORATORY |
|
INVESTIGATORS |
|
DESIGNATORS |
|
|
|
|
|
|
|
abc |
barley cDNA clones |
Kleinhofs, A. |
|
abg |
barley gDNA clones |
Kleinhofs, A. |
|
abl |
lolium clones |
Forster, J.W./Hayward, M.D. |
|
agl |
wheat 2D protein markers |
Branlard, G. |
|
ak |
|
Kleinhofs, A. |
|
awb |
barley clones |
Langridge, P. |
|
aww |
wheat clones |
Langridge, P. |
|
bcd |
barley cDNA clones |
Sorrells, M.E. |
|
bfc |
|
Nomura, T. |
|
bg |
barley gDNA clones |
Lapitan, N. |
|
bgl |
|
Lane, B. G. |
|
bnl |
|
Burr, B. |
|
bua |
barley AFLPs |
Langridge, P. |
|
bzh |
|
Dudler, R. |
|
ccsu |
|
Gupta, P.K |
|
cdc |
|
Gusta, L.V. |
|
cdo |
oat cDNA clones |
Sorrells, M.E. |
|
cfa |
SSR A genomes |
Sourdille, P. |
|
cfb |
SSR B genomes |
Bernard, M. |
|
cfd |
SSR D genomes |
Bernard, M. |
|
cfe |
EST-SSRs |
Sourdille, P. |
|
cfr |
transposable elements |
Sourdille, P. |
|
cft |
chromosome 3B BAC-ends |
Sourdille, P. |
|
cmw |
Chinese wheat EST-SSR |
TAG-112-1239 |
|
cmwg |
barley cDNA clones |
Graner, A. |
|
cnl |
|
Sorrells, M.E. |
|
cr |
|
Robinson, C. |
|
crb |
barley AFLPs |
Penner, G. |
|
crc |
|
Procunier, J.D. |
|
cro |
oat AFLPs |
Penner, G. |
|
crw |
wheat AFLPs |
Penner, G. |
|
cs |
|
Appels, R. |
|
csa |
|
Appels, R. |
|
csb |
|
Appels, R. |
|
csc |
|
Chandler, P. |
|
csd |
|
Dennis, L. |
|
cshv |
|
Appels, R. |
|
csih |
|
Appels, R. |
|
csiha |
|
Appels, R. |
|
csl |
|
Lagudah, E. |
|
cssr |
|
Appels, R. |
|
csu |
maize cDNA clones |
Bayersdorfer, C. |
|
cwem |
Colorado wheat EST-derived microsatellites |
Lapitan, N.L..V. |
|
cwm |
wheat EST-derived microsatelites |
Jia, J.Z |
|
DuPw |
wheat SSR markers |
Wolters, P.J. |
|
eco |
|
Fedak, G. |
|
fba |
wheat cv. Courtot clones |
Leroy, P. |
|
fbb |
wheat cv. Chinese Spring |
Leroy, P. |
|
|
clones |
|
|
fwm |
wheat SSRs |
Leroy, P. |
|
fcc |
Fargo Cereal Crops QTL |
Faris, J. |
|
fcg |
Fargo Cereal Crops Genomic DNA |
Faris, J. |
|
fcp |
Fargo Cereal Crops PCR |
Faris, J. |
|
fcu |
Fargo Cereal Crops cDNA |
Faris, J. |
|
fdp |
|
DuPont, F.M. |
|
gbs |
Gatersleben barley SNPs |
A. Graner |
|
gbm |
Gatersleben barley SSRs |
A. Graner |
|
gbr |
Gatersleben barley RFLP |
A. Graner |
|
gbx |
wheat clones |
Jacquemin, J.M. |
|
gdm |
|
Roder, M.S. |
|
ggo |
|
Jakobsen, K.S. |
|
glk |
T. aestivum gDNA clones |
Tsunewaki, K. |
|
|
clones are designated |
|
|
|
'Tag' but the laboratory |
|
|
|
designator used in locus |
|
|
|
symbols is 'glk') |
|
|
gpw |
wheat SSRs |
Sourdille, P. |
|
gwm |
wheat SSRs |
Roder, M.S. |
|
|
(primers are designated |
|
|
|
'WMS' but the laboratory |
|
|
|
designator used in locus |
|
|
|
symbols is 'gwm') |
|
|
hbd |
SSRs from DDBJ |
Ogihara, Y. |
|
hbe |
EST-SSR |
Ogihara, Y. |
|
hbg |
Genomic SSR |
Ogihara, Y. |
|
hhu |
|
Westhoff, P. |
|
iag |
|
Wricke, G. |
|
isc |
wheat clones |
Cattivelli, L. |
|
ipk |
|
Borner, A. |
|
isu |
maize cDNA clones |
Lee, M. |
|
jfc |
wheat cDNA clones |
John Fellers |
|
jfg |
wheat genomic clones |
John Fellers |
|
jfs |
wheat microsatellite markers |
John Fellers |
|
jfr |
wheat resistance gene analogs |
John Fellers |
|
ksu |
T. tauschii gDNA clones |
Gill, B. |
|
kuj |
|
Mori, N. |
|
kvl |
|
Collinge, D.B. |
|
labc |
barley cDNA clones |
Shewry, P. |
|
mgb |
|
Blanco, A. |
|
msu |
|
Raikhel, N. |
|
|
|
|
|
msu |
update 2000 |
Talbert L. |
|
(Problem duplicated designator msu) |
|
|
|
|
|
|
|
mta |
T. aestivum clones |
Joudrier, P. |
|
mtd |
T. durum clones |
Joudrier, P. |
|
mwg |
barley gDNA clones |
Graner, A. |
|
mum? |
|
Maxime Paris |
|
nau |
wheat clones |
Chen, P. |
|
ncs |
oat |
Murphy, Paul |
|
ndsu |
|
Anderson, J.A. |
|
npi |
|
Grant, D. |
|
ocs |
|
Kato, K. |
|
og |
oat gDNA clones |
Sorrells, M.E. |
|
pbi |
barley gDNA clones |
Jack, P. |
|
pgh |
|
Shimosaka, E. |
|
psp |
|
Grant, D. |
|
pkg |
|
Gausing, K. |
|
psb |
barley clones |
Laurie, D. |
|
pse |
finger millet clones |
Gale, M.D. |
|
psf |
foxtail millet clones |
Gale, M.D. |
|
psm |
pearl millet clones |
Gale, M.D. |
|
psp |
pcr markers |
Gale, M.D. |
|
psr |
wheat clones |
Gale, M.D. |
|
pur |
|
Ohm, H. |
|
rgc |
rice cDNA clones |
Sasaki, T. |
|
rgg |
rice gDNA clones |
Sasaki, T. |
|
rgr |
rice root cDNA clones |
Sasaki, T. |
|
rgs |
rice etiolated shoot |
Sasaki, T. (see rgc) |
|
rgy |
rice YAC end clones |
Sasaki, T. |
|
ris |
barley gDNA clones |
Giese, H. |
|
rmm |
millet RGA clones |
Michelmore, R. |
|
rsq |
|
Quatrano, R. |
|
rwg |
wheat, Hessian fly |
Xu, Steven |
|
rwgs |
wheat, Hessian fly, PCR |
Xu, Steven |
|
rwth |
barley gDNA clones |
Rheinisch-Westfaelische |
|
|
Technische Hochschule |
|
|
rz |
rice gDNA clones |
Sorrells, M.E. |
|
scc |
S. cereale cDNA clones |
Gustafson, P. |
|
scg |
S. cereale gDNA clones |
Gustafson, P. |
|
scm |
Secale cereale microsatellites |
Hackauf, Bernd |
|
|
|
|
|
scs |
S. cereale SSRs |
Gustafson, P. |
|
scu |
SSRs |
Henry, R.H. |
|
sfr |
|
Keller, B. |
|
sfrp |
|
Keller, B. |
|
spa |
|
Knox, R. |
|
stm |
SSRs |
Sharp, P. |
|
sun |
|
Sharp, P. |
|
sut |
|
(sucrose transporter) |
|
sww |
switchgrass |
Tobias, C. |
|
tam |
wheat clones |
Hart, G.E. |
|
tav |
|
Breiman, A. |
|
tjc |
|
Close, T. |
|
ttp |
pcr markers |
Nguyen, H. |
|
ttr |
rice clones |
Nguyen, H. |
|
tts |
sorghum clones |
Nguyen, H. |
|
ttu |
cDNAs corresponding |
Nguyen, H. |
|
|
to 'known-function' |
|
|
|
genes and 'stress- |
|
|
|
responsive' proteins |
|
|
ttw |
wheat clones |
Nguyen, H. |
|
txs |
sorghum clones |
Hart, G.E. |
|
txp |
sorghum SSRs |
Hart, G.E. |
|
uaz |
maize cDNAs |
Helentjaris, T. |
|
ubp |
|
Spagnoletti, P. |
|
ucb |
|
Quail, P.H. |
|
ucd |
cDNAs corresponding to |
Dvorák, J. |
|
|
early-salt-induced' mRNAs |
|
|
ucg |
|
Hasselkorn, R. |
|
ucw |
|
Dubcovsky, J. |
|
uhb |
barley |
Fahima, T. |
|
uhw |
wheat |
Fahima, T. |
|
umb |
barley EST-SSRs |
Smith, Kevin |
|
umc |
maize clones |
Coe, E. |
|
umn |
|
Muehlbauer, G. |
|
unl |
|
Gill, K. |
|
unlp |
|
Castro, A.M. |
|
uom |
millet RGA clones |
Sivaramakrishnan, S. |
|
upw |
|
Williams, C. |
|
ust |
|
Marais, G. F. |
|
uta |
|
Browning, K. |
|
utv |
|
D'Ovidio, R. |
|
waxc |
|
von Wettstein-Knowles, P. |
|
wg |
wheat gDNA clones |
Sorrells, M.E. |
|
wgc |
wheat EST-SSRs and STSs |
Cai, X. |
|
wgp |
|
Chen, X. |
|
whe |
|
Anderson, O. |
|
whs |
wheat gDNA clones |
Mohler, V. |
|
wia |
|
Fincher, G. |
|
wmc |
wheat SSRs |
Isaac, P.G. |
|
wpg |
|
Feldman, M. |
|
wsu |
|
Walker-Simmons, M.K. |
|
wua |
wheat AFLPs |
Langridge, P. |
|
wye |
|
Ainsworth, C. |
|
ycu |
|
Ogihara, Y. |
|
zen |
barley gDNA clones |
Chojecki, J. |
|
zens |
|
Schuch, W. |
|
INVESTIGATORS |
LABORATORY DESIGNATORS |
|
|
|
|
|
|
Ainsworth, C. |
wye |
|
|
'sbs_ca@uk.ac.lon.wye' |
|
|
|
Wye College* |
|
|
|
University of London |
|
|
|
Wye, Ashford, Kent TN25 5AH |
|
|
|
UK |
|
|
|
|
|
|
|
Anderson, James A. |
ndsu |
|
|
'ander319@tc.umn.edu' |
|
|
|
Dept. of Agronomy & Plant Genetics |
|
|
|
University of Minnesota |
|
|
|
411 Borlaug Hall |
|
|
|
St. Paul, MN 55108 |
|
|
|
USA |
|
|
|
|
|
|
|
Anderson, O. |
whe |
|
|
'oandersn@pw.usda.gov' |
|
|
|
Western Regional Research Center |
|
|
|
USDA-Agricultural Research |
|
|
|
Service |
|
|
|
800 Buchanan Street |
|
|
|
Albany, California 94710 |
|
|
|
USA |
|
|
|
|
|
|
|
Appels, R. |
cs, csa, csb, cshv, |
|
|
'rudi@pican.pi.csiro.au' |
csih, csiha, csl |
|
|
Division of Plant Industry |
and cssr |
|
|
Institute of Plant Production |
|
|
|
and Processing |
|
|
|
CSIRO* |
|
|
|
GPO Box 1600 |
|
|
|
Canberra ACT 2601 |
|
|
|
Australia |
|
|
|
|
|
|
|
Baysdorfer, C. |
csu |
maize cDNAs |
|
'72652.662@compucerve.com' |
|
|
|
Biological Sciences Department |
|
|
|
California State University |
|
|
|
Hayward, California 94542 |
|
|
|
USA |
|
|
|
|
|
|
|
Bernard, M. |
cfb |
SSRs B genome |
|
cfd |
SSRs D genome |
|
|
UMR Amélioration et Santé des plantes, INRA – UBP |
|
|
|
63039 Clermont-Ferrand*, Cedex 2 |
|
|
|
France |
|
|
|
|
|
|
|
Blanco, A. |
mgb |
|
|
Institute of Plant Breeding |
|
|
|
University of Bari |
|
|
|
via Amendola 165/A |
|
|
|
I-70126 |
|
|
|
Bari |
|
|
|
Italy |
|
|
|
|
|
|
|
Borner, A. |
ipk |
|
|
'borner@ipk.gatersleben.de' |
|
|
|
Institut fuer Pflanzengenetik und |
|
|
|
kulturpflanzenforschung (IPK)* |
|
|
|
Corrensstr. 3 |
|
|
|
06466 Gatersleben |
|
|
|
FRG |
|
|
|
|
|
|
|
Branlard, G. |
agl |
wheat 2D protein markers |
|
branlard@clermont.inra.fr |
|
|
|
INRA-UBP UMR 1095 |
|
|
|
234 Avenue du Brèzet |
|
|
|
F-63100 Clermont-Ferrand |
|
|
|
France |
|
|
|
|
|
|
|
Breiman, A. |
tav |
|
|
'adina@crsg.tav.ac.il' |
|
|
|
Tel Aviv University* |
|
|
|
University Campus |
|
|
|
Ramat Aviv |
|
|
|
Tel Aviv 69978 |
|
|
|
Israel |
|
|
|
|
|
|
|
Browning, K. |
uta |
|
|
'kbrowning@mail.utexas.edu' |
|
|
|
Department of Chemistry |
|
|
|
University of Texas* |
|
|
|
Austin, Texas |
|
|
|
USA |
|
|
|
|
|
|
|
Burr, B. |
bnl |
maize clones |
|
'burr@bnlux1.bnl.gov' |
|
|
|
Biology Department |
|
|
|
Brookhaven National Laboratory* |
|
|
|
Upton, NY 11973 |
|
|
|
USA |
|
|
|
|
|
|
|
Cattivelli, L. |
isc |
|
|
|
|
|
|
Experimental Institute for Cereal Research |
|
|
|
Via S. Protaso, 302 |
|
|
|
Fiorenzuola d'Arca (PC) |
|
|
|
I-29017 Italy |
|
|
|
|
|
|
|
Cai, Xiwen |
wgc |
wheat EST-SSRs and STSs |
|
'xiwen.cai@ndsu.edu' |
|
|
|
North Dakota State University |
|
|
|
Fargo, ND 58105 |
|
|
|
USA |
|
|
|
|
|
|
|
Chandler, P. |
csc |
|
|
'peter.chandler@pi.csiro.au' |
|
|
|
Division of Plant Industry |
|
|
|
Institute of Plant Production |
|
|
|
and Processing |
|
|
|
CSIRO* |
|
|
|
GPO Box 1600 |
|
|
|
Canberra ACT 2601 |
|
|
|
Australia |
|
|
|
|
|
|
|
Chen, Peidu |
nau |
wheat clones |
|
|
|
|
|
Cytogenetics Institute |
|
|
|
Nanjing Agricultural University |
|
|
|
Nanjing, Jiangsu 210095 |
|
|
|
China |
|
|
|
|
|
|
|
Chen, Xianming |
wgp |
|
|
|
|
|
|
USDA-ARS |
|
|
|
Department of Plant Pathology |
|
|
|
Washington State University |
|
|
|
Pullman, Washington 99164 |
|
|
|
U.S.A. |
|
|
|
|
|
|
|
Chojecki, J. |
zen |
barley gDNA clones |
|
'ajsc@plasci.com' |
|
|
|
John Innes Centre Innovations |
|
|
|
Hill House |
|
|
|
John Innes Centre |
|
|
|
Norwich Research Park |
|
|
|
Colney, Norwich |
|
|
|
UK |
|
|
|
|
|
|
|
Close, T.* |
tjc |
|
|
timothy.close@ucr.edu |
|
|
|
University of California |
|
|
|
Dept. of Botany and Plant Sciences |
|
|
|
Riverside, CA 92521-0124 |
|
|
|
USA |
|
|
|
|
|
|
|
Coe, E. |
umc |
maize clones |
|
'ed@teosinte.agron.missouri.edu' |
|
|
|
USDA-Agricultural Research |
|
|
|
Service |
|
|
|
Department of Agronomy |
|
|
|
Curtis Hall |
|
|
|
University of Missouri* |
|
|
|
Columbia, Missouri |
|
|
|
USA |
|
|
|
|
|
|
|
Collinge, D.B. |
kvl |
|
|
Section for Plant Pathology |
|
|
|
Dept. of Plant Biology |
|
|
|
Royal Veterinary and Agricultural University* |
|
|
|
Thorvaldsenvej 40 |
|
|
|
1871 Frederiksberg C |
|
|
|
Denmark |
|
|
|
|
|
|
|
Dennis, L. |
csd |
|
|
'liz.dennis@pi.csiro.au' |
|
|
|
Division of Plant Industry |
|
|
|
Institute of Plant Production |
|
|
|
and Processing |
|
|
|
CSIRO* |
|
|
|
GPO Box 1600 |
|
|
|
Canberra ACT 2601 |
|
|
|
Australia |
|
|
|
|
|
|
|
Dubcovsky, J. |
ucw |
|
|
Department of Agronomy and |
|
|
|
Range Science |
|
|
|
University of California*-Davis |
|
|
|
One Shields Avenue |
|
|
|
Davis, California 95616-8515 |
|
|
|
USA |
|
|
|
|
|
|
|
Dudler, R. |
bzh |
|
|
'rdudler@botiast.unizh.ch' |
|
|
|
Institut fur Pflanzenbiologie* |
|
|
|
Universitat Zurich |
|
|
|
Zollikerstrasse 107 |
|
|
|
CH-8008 Zurich |
|
|
|
Switzerland |
|
|
|
|
|
|
|
DuPont, F.M.* |
fdp |
|
|
'fmd@pw.usda.gov' |
|
|
|
Western Regional Research Center |
|
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USDA-Agricultural Research |
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Service |
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800 Buchanan Street |
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Albany, California 94710 |
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USA |
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Dvorák, J. |
ucd |
cDNAs corresponding |
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'jdvorak@ucdavis.edu' |
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to 'early-salt- |
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Department of Agronomy and |
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induced' mRNAs |
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Range Science |
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University of California-Davis* |
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Davis, California 95616 |
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USA |
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Fahima, Tzion |
uhb |
barley |
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fahima@research.haifa.ac.il |
uhw |
wheat |
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Institute of Evolution |
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University of Haifa* |
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Mt. Carmel, Haifa 31905 |
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Israel |
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Faris, J. |
fcg, fcc, fcp and fcu |
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USDA/ARS Cereal Crops Research Unit |
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Northern Crop Science Laboratory |
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1307 18th Street North |
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Fargo, ND 58105 |
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USA |
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Fedak, G. |
eco |
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fedakga@agr.gc.ca |
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Eastern Cereal and Oilseed* Research Centre |
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Agriculture and Agri-Food Canada |
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960 Carling Ave |
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Building 50 |
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Ottawa, ON K1A 0C6 |
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Canada |
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Feldman, M. |
wpg |
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'lpfeld@weizmann.weizmann.ac.il' |
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Department of Plant Genetics* |
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Weizmann Institute of Science* |
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Rehovot 76100 |
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Israel |
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Gusta, L.V. |
cdc |
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Crop Development Centre* |
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University of Saskatchewan |
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51 Campus Drive |
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Saskatoon, Saskatchewan, S7N 5A8 |
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Canada |
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John Fellers |
jfc |
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USDA-ARS-PSERU |
jfg |
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4006 Throckmorton Hall |
jfs |
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Dept. of Plant Pathology |
jfr |
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Kansas State University |
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Manhattan, KS 66506 |
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jpf@alfalfa.ksu.edu |
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Fincher, G. |
wia |
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'gfinscher@waite.adelaide.edu.au' |
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Department of Agronomy |
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Waite Agricultural Research Institute* |
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University of Adelaide |
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Glen Osmond, South Australia 5065 |
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Australia |
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Forster, J.W. |
abl |
lolium clones |