European MICROME project :
Curator position (18 months, extension to 24 months
possible)
available in France.
CONTEXT :
Genoscope
(CEA) is a dynamic non-profit scientific organization dedicated to
the advancement
of environmental genomics that develops research
in high-throughput studies in biology, bioinformatics
and systems
biology. One of our research areas is that of prokaryote metabolism,
including
the study of bacterial communities, the search for novel
enzymatic functions, metabolic reprogramming
and modelling
thereof.
CEA is involved in the European MICROME project
which began in December 2009 (http://www.microme.eu).
This
project aims to extend the scope of microbial genome annotation from
functional assignment at the gene
level to the systematic
generation of pathway assemblies and genome-scale metabolic
models. MICROME
will provide a robust, scalable infrastructure
integrating a curated repository of reference pathways
with
genome-scale constraint-based models and downstream
applications in comparative genomics
and biotechnology.
-
FUNCTIONS AND RESPONSABILITIES :
CEA is seeking to recruit a
biocurator for a demanding role in curation of functional
Gene-Protein-Reaction
(GPR) associations, as well as the curation
of metabolic pathways from reference organisms.
The candidate will
work in close collaboration with the 13 MICROME consortium partners
and more specifically with
the Swiss Institute of Bioinformatics
(SIB, Swiss-Prot group) and with the European Bioinformatics
Institute (EBI).
QUALIFICATIONS AND EXPERIENCE :
A
university degree in life sciences and a broad knowledge in
biochemistry and/or enzymology and/or chemistry
are the minimum
requirements. A higher degree (such as MSc/PhD) and/or relevant
post-graduate experience are desirable
but not mandatory. Relevant
backgrounds include formal training and/or notable experience in
chemoinformatics.
Experience in using chemical and biological
databases is desirable. Experience in sequence analysis tools is
desirable but
not mandatory. Moreover, previous experience in
database curation is advantageous but not essential.
The
successful candidate must be detail-oriented and must be able to
quickly and accurately interpret scientific literature.
The
position requires excellent communication and organizational
skills in order to interact well under time pressure within a
team
of software developers and chemists/biologists and with external
partners.
Applicants are expected to have a solid knowledge of
English language.
JOB CONDTIONS :
This position is offered
in the context of a European project for a 18 months period (maybe
extended to 24 months).
Depending on the background and experience
of the successful candidate, the monthly salary will be between
2400
to 2900 euros.
Interested candidates should send a letter of
motivation and a CV to cmedigue@genoscope.cns.fr
and anne.morgat@isb-sib.ch