CATALOGUE OF GENE SYMBOLS FOR WHEAT:  2004 Supplement

 

R.A. McIntosh1, K.M. Devos2, J. Dubcovsky3 and W.J. Rogers4

 

1Plant Breeding Institute, The University of Sydney, 107 Cobbitty Road, Cobbitty, N.S.W., Australia, 2570.

2Departments of Crop and Soil Sciences, and Plant Biology, University of Georgia, Athens, GA 30602, U.S.A.

3Department of Agronomy and Range Science, University of California, Davis, CA 95616, U.S.A.

4Facultad de Agronomía, Universidad Nacional del Centro de la Provincia de Buenos Aires, C.C. 47, (7300) Azul, Argentina.

The most recent edition of the Catalogue, produced and presented at the 10th International Wheat Genetics Symposium is available on CD.  MacGene was produced by Y. Yamazaki in collaboration with R.A. McIntosh.  The Catalogue is also displayed on the GrainGenes Website: http://wheat.pw.usda.gov .

 

INTRODUCTION

1. Recommended Rules for Gene Symbolisation in Wheat

2.2.  Add:  'Where a molecule is composed of sub-units produced by different genes, a further capital letter may be added to the basic symbol to describe a particular sub-unit; for example, AhasL refers to a large sub-unit of the complex enzyme acetohydroxyacid synthase.'.

6.2.2.  Add to end of existing entry:  'R2 values, where given, indicate the proportion of variation explained by a QTL.'.

12.  Add to this rule: 'The entire sequence (134.540 bp) and a genetic map of the circular wheat chloroplast genome is provided in {10036}.  A total of 30 tRNA genes and 75 protein-encoding genes were identified.'.

 

9. Laboratory Designators for DNA markers

 

eco

Fedak, G.

fedakga@agr.gc.ca

Eastern Cereal and Oilseed* Research Centre,

Agriculture and Agri-Food Canada,

960 Carling Ave, Building 50,

Ottawa, ON K1A 0C6,

Canada

 

 

cfa

(T. monococcum clones)

Sourdille, Pierre

sourdil@clermont.inra.fr

UMR Amelioration et Sante des Plantes,

Domaine de Crouelle,

234, Avenue du Brezet,

63039, Clermont-Ferrand,

Cedex 2,

France

 

 

 

fwm

Sourdille, Pierre

sourdil@clermont.inra.fr

UMR Amelioration et Sante des Plantes,

Domaine de Crouelle,

234, Avenue du Brezet,

63039, Clermont-Ferrand,

Cedex 2,

France

 

 

nau

Chen, Piedu,

pdchen@njau.edu.cn

Cytogenetics Institute,

Nanjing Agricultural University,

Nanjing,

Jiangsu, 210095,

China

 

 

pur

Ohm, H.

hohm@purdue.edu

Department of Agronomy,

Purdue University,

West Lafayette,

IN, 47907-2054,

USA

 

 

umn

Muehlbauer, G.

muehl003@umn.edu

Department of Agronomy and Plant Genetics,

University of Minnesota,

St Paul,

MN,

USA

 

 

wgp

Chen, Xianming

xianming@mail.wsu.edu

USDA-ARS,

Department of Plant Pathlogy,   

Washington State University, Pullman,   

Washington 99164-6430                   

U.S.A.  

 

 

 

10. Organisation of the Catalogue

4. Stock listings:

After tv2: add new group: sutv: = Chromosome substitutions into tetraploid wheat.

 

DNA Markers

Add at end of introductory section:

‘Approximately 8000 ESTs have been mapped on a set of 101 deletion lines, containing 159 deletions distributed over the 42 wheat chromosome arms.  The allocation of these ESTs to chromosome ‘bins’ can be viewed on http://wheat.pw.usda.gov/NSF/progress_mapping.html.  Manuscripts resulting from this work include {10041} and {10042}.’

 

Group 1S

Add:

XBmac0213-1R {10081}.

 

Barley SSR.

 

Xcfd61-1A {10071}.

 

CFD 61 F/CFD 61 R.

 

Xeco406-1A,B,D {10047}.

 

Ta01_04b06.

 

Xiag95-1R {10081,10074}.

 

STS marker.

 

Xksu946(NBS-LRR)-1A,B,D {10052}.

 

KSU946.

(2B, 3A).

Xksuk951(Kin)-1D {10052}.

 

KSUK951.

(1A, 1BL, 3D, 6D, 7B).

Xpsr960-1R {10081}.

 

PSR960.

 

XSCM9-1R {10081}.

 

Rye SSR.

 

 

Group 1L

Add:

Xcdo346-1A {10071}.

 

CDO346.

 

Xeco702-1A,B {10047}.

 

Ta01_07h02.

 

Xeco812-1D {10047}.

 

Ta01_08f12.

(6A,B,D).

Xfbb275-1A {10071}.

 

FBB275.

 

Xgwm601-1A {10071}.

 

WMS 601 F/WMS601 R.

 

Xksuk951(Kin)-1B {10052}.

 

KSUK951.

(1A, 1DS, 3D, 6D, 7B).

 

Group 1

Add:

Xbcd1514-1A {10048}.

 

BCD1514.

 

Xbcd1562-1A {10048}.

 

BCD1562.

 

Xbcd1930-1B {10048}.

 

BCD1930.

 

Xcfd92-1D {10071}.

 

CFD 92 F/CFD 92 R.

 

Xfba118-1B {10048}.

 

FBA118.

 

Xfba165-1B {10048}.

 

FBA165.

 

Xfba294-1A {10048}.

 

FBA294.

 

Xfba298-1B {10048}.

 

FBA298.

 

Xfbb90-1A {10048}.

 

FBB90.

 

Xfbb160-1D {10048}.

 

FBB160.

 

Xfbb190-1A {10048}.

 

FBB190.

 

Xfbb196-1B {10048}.

 

FBB196.

 

Xfbb278-1A,B {10048}.

 

FBB278.

 

Xksu36-1A,D {10048}.

 

AFLP-36F/AFLP-36R.

 

Xksu940(NBS-LRR)-1A,B,D {10052}.

 

KSU940.

 

Xksu941(NBS-LRR)-1B,D {10052}.

 

KSU941.

 

Xksu942(NBS-LRR)-1B,D {10052}.

 

KSU942.

 

Xksu945(NBS-LRR)-1B {10052}.

 

KSU945.

(2D).

Xksuk950(Kin)-1A,B,D {10052}.

 

KSUK950.

 

Xksuk951(Kin)-1A {10052}.

 

KSUK951.

(1BL, 1DS, 3D, 6D, 7B).

Xksuk955(Kin)-1D {10052}.

 

KSUK955.

(2B, 5A,D, 6A,B).

Xksuk959(Kin)-1A,B {10052}.

 

KSUK959.

(4B).

Xksuk963(Kin)-1D {10052}.

 

KSUK963.

(2B, 3B,D, 5D).

Xksuk969(Kin)-1D {10052}.

 

KSUK969.

 

Xksuk970(Kin)-1A {10052}.

 

KSUK970.

(3B, 5D).

Xksuk971(Kin)-1D {10052}.

 

KSUK971.

(2D, 3A, 7B).

Xnau1(NBS)-1A,B {10084}.

 

RGA WN20.

 

Wag-1A, B, D {10078}.                                               {10078}

 

Probe 386-bp of the 3’ end of GenBank accession AB084577.

 

 

Group 2S

Amendments:

Xgdm5-2A.  Change the first column to ‘Xgdm5-2A {0173}, 2D {10055}.’.

Xpsr102(Sam)-2A,B,D. Add: ‘The development of locus-specific primers for the A, B and D loci was reported in {0049}.’.

Xpsr112-2A,B,D. Add:  ‘The development of locus-specific primers for the A, B, D and R loci was reported in {0049}.’.

 

Add:

Xbcd348-2N {10073}.

 

BCD348.

 

 

Xcmwg682-2N {10073}.

 

CMWG682.

 

 

Xeco509-2A,B,D {10047}.

 

Ta01_05h09.

(7A,B,D).

 

Xfbb67-2B {10071}.

 

FBB67.

 

 

Xgwm400-2A{10071}.

 

WMS 400 F/WMS 400 R.

 

 

Xgwm429-2B {10071}.

 

WMS 429 F/WMS 429 R.

 

 

Xgwm682-2B {10055}.

 

WMS F682/WMS R682.

 

 

Xgwm726-2A {10047}.

 

WMS F726/WMS R726.

 

 

Xgwm830-2A {10055}.

 

WMS F830/WMS R830.

 

 

Xgwm886-2D {10055}.

 

WMS F886/WMS R886.

 

 

Xgwm895-2A {10055}.

 

WMS F895/WMS R895.

 

 

Xgwm1045-2A {10055}.

 

WMS F1045/WMS R1045.

 

 

Xgwm1052-2A {10055}.

 

WMS F1052/WMS R1052.

 

 

Xgwm1115-2A {10055}.

 

WMS F1115/WMS R1115.

 

 

XHak2-2A {9932,10073}.

 

HvHAK2.

 

 

Xgwm1128-2B {10055}.

 

WMS F1128/WMS R1128.

 

 

XksuH9-2N {10073}.

 

KSUH9.

 

 

XksuD18-2N {10073}.

 

KSUD18.

 

 

Xpsr150-2N {10073}.

 

PSR150.

 

 

Xpsr933.1-2N {10073}.

 

PSR933.

 

 

Xvrga1-2N {0213,10073}.

 

VRGA1.

 

 

 

5.Group 2L

Add:

Xcsl107-2B {10013}.

 

G4-5', G035-5', G035-3'.

(2D).

Xcsl107-2D {10013}.

 

G4-5', G035-5', G035-3'.

(2B).

Xeco203-2A,B,D {10047}.

 

Ta01_02b03.

 

Xeco208(L38)-2D {10047}.

 

Ta01_02g08.

 

Xfba259-2B {10071}.

 

FBA259.

 

Xgwm761-2A {10055}.

 

WMS F761/WMS R761.

 

Xgwm940-2B [{10055}].

[Xgwm940a-2B {0455}].

WMS F940/WMS R940.

 

Xgwm1027-2B {10055}.

 

WMS F1027/WMS R1027.

 

Xgwm1204-2D {10055}.

 

WMS F1204/WMS R1204.

 

Xgwm1249-2B {10055}.

 

WMS F1249/WMS R1249.

 

Xgwm1256-2A {10055}.

 

WMS F1256/WMS R1256.

 

Xgwm1264-2D {10055}.

 

WMS F1264/WMS R1264.

 

Xksu944(NBS-LRR)-2A {10052}.

 

KSU944.

(5D).

Xksu946(NBS-LRR)-2B {10052}.

 

KSU946.

(1A,B,D, 3A).

XksuK965(Kin)-2A,B {10052}.

 

KSUK965.

 

Note: The location of the XksuK965-2A locus was ambiguous as the same fragment was missing in both N5B and N2A.  It is likely, however, that the absence of the fragment in N5B was caused by rearrangements due to the absence of Ph1 {10053}.

Xwmc474-2B {10055}.

 

WMC 474F/WMC 474R.

(2A).

Xwmc477-2B {10055}.

 

WMC 477F/WMC 477R.

 

Xwgp17(Rga)-2B  {10117}.

 

S2/AS3.

 

Xwgp18(Rga)-2B

{10117}.

 

S2/AS3.

 

Xwgp19(Rga)-2B {10117}.

 

RLRR Rev/LM638.

 

Xwgp20(Rga)-2B {10117}.

 

RLRR Rev/LM638.

 

Xwgp21(Rga)-2B {10117}.

 

Pto kin11N/Pto kin21N.

 

Xwgp22(Rga)-2B {10117}.

 

Cr33LR-R/Pto kin2.

 

Xwgp23(Rga)-2B {10117}.

 

Cr33LR-R/Pto kin2.

 

Xwgp24(Rga)-2B {10117}.

 

Xa1LR-F/Pto kin4.