V. CATALOGUE OF GENE SYMBOLS FOR WHEAT: 2007 Supplement.

R.A. McIntosh 1, K.M. Devos 2, J. Dubcovsky 3, W.J. Rogers 4, C.F. Morris 5, R. Appels 6, D.J. Somers 7, and O.A. Anderson 8.

1 Plant Breeding Institute, The University of Sydney Plant Breeding Institute Cobbitty, Private Bag 11, Camden, N.S.W. 2570, Australia. bobm@camden.usyd.edu.au
2 Departments of Crop and Soil Sciences, and Plant Biology, University of Georgia, Athens, GA 30602, U.S.A. kdevos@uga.edu
3 Department of Agronomy and Range Science, University of California, Davis, CA 95616, U.S.A. jdubcovsky@ucdavis.edu
4 Facultad de Agronomía, Universidad Nacional del Centro de la Provincia de Buenos Aires, C.C. 47, (7300) Azul, and Researcher of CONICET, Argentina. rogers@faa.unicen.edu.ar
5 USDA-ARS Western Wheat Laboratory, Pullman, WA 99164-6394, U.S.A. morrisc@wsu.edu
6 W.A. Department of Agriculture & Molecular Plant Breeding Research Centre, Biological Sciences, Murdoch University, Locked Bag 4, Bentley Delivery Centre, Perth, W.A. 6983, Australia. rappels@agric.wa.gov.au
7Agriculture and Agri-Food Canada­Cereal Research Centre, 195 Dafor Road, Winnipeg, MB, Canada. SomersD@agr.gc.ca
8USDA-ARS 800 Buchanan St., Albany, CA 94710, U.S.A. oandersn@pw.usda

The most recent edition of the Catalogue, produced and presented at the 10th International Wheat Genetics Symposium is available on CD. MacGene was produced by Y. Yamazaki (yyamazak@lab.nig.ac.jp) in collaboration with R.A. McIntosh. The Catalogue and the 2004, 2005, 2006, and 2007 Supplement are displayed on the GrainGenes Website: http://wheat.pw.usda.gov.


2007 Supplement

Revisions.

INTRODUCTION
Recommended Rules

9. Laboratory Designators for DNA markers

fcc
 (Fargo cereal crops unit - for QTL)

Faris, Justin D.
USDA-ARS Cereal Crops Research Unit
Northern Crop Science Laboratory
Agricultural Research Center
Fargo, ND 58105
USA
farisj@fargo.ars.usda.gov
fcg

 (Fargo cereal crops genomic DNA - for genomic DNA clones)

Faris, Justin D.
USDA-ARS Cereal Crops Research Unit
Northern Crop Science Laboratory
Agricultural Research Center
Fargo, ND 58105
USA
farisj@fargo.ars.usda.gov

fcp

 (Fargo cereal crops PCR - for PCR markers)

Faris, Justin D.
USDA-ARS Cereal Crops Research Unit
Northern Crop Science Laboratory
Agricultural Research Center
Fargo, ND 58105
USA
farisj@fargo.ars.usda.gov

fcu

  (Fargo cereal crops cDNA - for cDNA clones)

Faris, Justin D.
USDA-ARS Cereal Crops Research Unit
Northern Crop Science Laboratory
Agricultural Research Center
Fargo, ND 58105
USA
farisj@fargo.ars.usda.gov

unlp
Castro, A.M.
Genetics
Faculty of Agricultural Sciences
UNLP
CC31, 1900-La Plata
Argentina
spa
Dr. R. Knox
Semiarid and Prairie Research
Centre Agriculture and Agri-Food Canada
P.O. Box 1030
Swift Current, SK S9H 3X2
Canada
cmw

Chinese wheat eSSR Fu et al. 2006 TAG 112: 1239-1247.

cnl

Cornell University eSSR Yu et al. 2004 Genome 47: 805-818.

hbd

SSR loci from sequences in DDBJ {10330}.

hbe

EST sequence based SSR {10330}.

hbg

Genomic SSR {10330}.


Gene Symbol
Add to gene symbols list:

Almt. Malate transporter (GeneBank AB081803).

Nam1. Regulation of senescence and grain maturity. Pleiotropic effects in grain protein and nutrient content (iron and zinc).

Lvl. Loaf volume.

Vrt-2. Mads-box (GenBank DQ022679) {10294}.



Morphological and Physiological Traits

1. Gross Morphology: Spike characteristics

Insert at the end of the introductory paragraph: In a large study of six agronomic traits in a AC Karma / 87E03-S2B1 DH populaton, 24 QTL were detected in 12 chromosomes {10434}.

 

5.5. Purple grain/pericarp

Pp1. 7BL {10392}. v: Novosibirsk 67 {10392}. Note, this cultivar has white pericarp.

v2: Purple K49426 Pp3a {10392}; Purple Feed Pp3b {10392}.

ma: Xgwm983-7B ­ 15.2 cM ­ Pp1 ­ 11.3 cM ­ Xgwm767-7B {10392}.

Pp2. Add note: Pp2 was renamed Pp3b.

Pp3 {10392}. 2A, not 6A {0066; 10392}.

Pp3a {10392}. v2: Purple K49426 Pp1 {10392}.

ma: Xgwm328-2AS ­ 2.7 cM ­ Pp3a ­ 3.2 cM ­ Xgwm817-2AL {10392}.

Pp3b {10392}. Pp2.

v2: Purple Feed {0066, 10392}.

ma: Xgwm328-2AS ­ 5.2 cM ­ Pp3b/Xgwm817/Xgwm912-2A ­ 3.6 cM ­ Xgwm445-2A {10392}.

pp1pp3. v: Saratovskaya 29 {10392}. Note, this cultivar has red pericarp.

6. Awnedness

6.1.2. Tipped 1

B1. ma: Correct the first entry to: Xgwm410.2-5A ­ 8.2 cM ­ B1 ­ 12.2 cM ­ Yr34 {10040}. Add: Xgwm291-5A.3 ­ 5.3 cM ­ B1 {10330}.

9. Brittle Rachis

Br-D1. Br61 {10362}. v: R-61 {10362}.

 

17. Dormancy (Seed)

QTL: After Zenkoujikomugi/CS add:
Zenkoujikomugi/Spica: White-seeded wheats with the dormancy-related QTL, QPhs-3AS from Zenkoujikomugi were more resistant to PHS than counterparts with the contrasting allele from Spica {10377}. White-seeded wheats with contrasting alleles of QPhs-4AL were not different {10377}.

Diploid wheat
QTL: T. monococcum subsp. monococcum KT3-5 (nondormant) / T. monococcum subsp. aegilopoides KT1-1 (dormant): RIL population: QTL on chromosome 5AmL, Xcdo1326c-5A - Xabc302-5A), R2 = 0.2 - 0.27. Weaker QTL were found on 3Am (TmAB18 ­ Xwmc102-3A and Xrz444-3A ­ TmABF) and 4Am (Xrz261-4A ­ Xrz141-4A) {0892}. The 3Am QTL co-located with TmABF and TmAB18 {10417}, derived from othologous ABA signaling genes in Arabidopsis. The 5A QTL may be orthologous to the barley dormancy gene SD1 {10417}.

 

23. Frost Resistance

QTL: Norstar (tolerant) / Winter Manitou (nontolerant: DH population: Norstar possessed major and minor QTL for tolerance on chromosomes 5A and 1D. The 5A QTL was 46 cM proximal to the vrn-A1 locus (R2 = 0.4); its peak co-incided with Xwmc206-5A and Xcfd2-5A, and expression of C-repeat Binding Factor genes with strong homology to Cfb14 and Cfb15 located at the Fr-2 locus in T. monococcum subsp. monococcum {10414}.

 

27. Glume Colour and Awn Colour

Black glumes are now included in the following homoeologous series with red/brown/bronze glumes.

27.1. Red (brown/bronze/black) glumes

The majority of studies report a single dominant gene for red glume colour. A few papers report two factors {1009, 1477, 1520}. Red glume colour in Swedish land cultivars is apparently associated with hairy glumes {1277} suggesting, because Hg is located in chromosome 1A, that a red glume factor different from Rg1 was involved in the Swedish stocks. Nothing was known of the possible association of such a gene with Bg, another glume colour gene on 1A. See {1640} for review. A chromosome 1A gene, Rg3, was eventually identified by linkage with Gli-A1 {1405} and shown to cosegregate with Hg {624}.

Rg-A1 {10378}. Rg3 {924,562}. 1AS {924, 562, 9906}.

Rg-A1a {10378}. v: TRI 542 {10378}; white-glumed genotypes.

dv: DV92 {282}; G2528 {10378}.

Rg-A1b {10378}. Rg3. i: Saratovskaya 29*3 // F2 CS mono 1 / Strela {924}.

v: CS / Strela Seln {9906}; Iskra {9906}; L'goskaya-4 {1405}; L'govskaya-47 {1405}; Zhnitsa {9906, 10378}.

v2: Milturum 553 RgB1b {9906}; Milturum 321 Rg-B1b {9906}; Strela Rg-B1b {9906, 924}; Sobko & Sozinov {1405, 1406} reported a further group of 30 international wheats which, by inference from their Gli-A1 alleles, probably carry Rg-A1b.

ma: A linkage order of Glu-A1 ­ cent ­ Hg ­ Rg-A1b was reported {1405}.

Rg-A1c {10378}. Bg {282, 1304}, Bg(a) {282}3]. 1A {282,1304}.

i: ANK-22A {10378}; S29BgHg {10378}.

s: CS*7/Indian 1A {1304}.

dv: G1777 {282}; G3116 {282}.

ma: Rg-A1c(Bg) and Nor9 co-segregated in T. monococcum subsp. monococcum {282}3; Xutv1391-1A (distal) ­ 3 cM ­ Rg-A1c(Bg) ­ 1.6 cM ­ Hg ­ 2.4 cM ­ Gli-A1 (proximal) {9959}2. Xgwm1223-A1 ­ 0 & 0.6 cM ­ Rg-A1c ­ 4.7 & 4.6 cM ­ Xgwm0136-1A {10378}.
Five of six wheats with Rg-A1c possessed a 264-bp allele at Xgwm0136-1A {10378}.

Rg-A1d. [Bg(b) {282}3]. dv: G3116 {282}.

At the diploid level, Rg-A1c (Bga) and Rg-A1d (Bgb) were dominant and caused a solid black glume and a black line at the margins of the glume, respectively {282}. A single factor for black glumes was reported in diploid, tetraploid, and hexaploid wheats {1347}. Linkage with Hg was demonstrated at all levels of ploidy, indicating a common gene on chromosome 1A; Bg is epistatic to Rg.

Rg-B1 {10378}. Rg1, Rg. 1B {1517}. 1BS {369}.

Rg-B1a {10378}. v: TRI 542 {10378}; white-glumed genotypes.

dv: T. turgidum subsp. dicoccoides acc. MG4343 {9959}.

Rg-B1b {10378}. Rg1. s: CS*5/Red Egyptian 1B {1304}.

v: Diamant I {9906}; Federation 41 {1517}; Highbury {1121}; Red Egyptian {1304}; T. petrapavlovskyi {9906}.

v2: Milturum 321 Rg-A1b {9906}; Milturum 553 Rg-A1b {9906}; Strela Rg-A1b {9906}.

tv: Messapia {9959}; Ward {792}.

ma: Xytv1518-1B (distal) ­ 7.7 cM ­ RgB1b ­ 0.8 cM ­ G1i-B1 (proximal) {9959}. Xgwm1078-

1B ­ 1.5 cM ­ Rg-B1b ­ 3.1 cM ­ Xgwm0550-B1 {10378}. Xutv1518-1B (distal) ­ 7.7 cM­

Rg-B1b ­ 0.8 cM ­ Gli-B1 (proximal) {9959}2.

Rg-D1 {10378}. Rg2. 1DL {769,1241}. 1DS.

Rg-D1a {10378}. v: Novosibirskaya 67 {10378}; L301 {10378}; white-glumed genotypes.

Rg-D1b {10378}. Rg2. Derived from Aegilops tauschii.

i: Saratovskaya 29*5 // T. timopheevii subsp. timopheevii / Ae. tauschii {9906}.

v: Synthetic Hexaploid-11 {10128}; (Triticum turgidum subsp. dicoccoides / Ae. tauschii) {769}; (Tetra Canthatch / Ae. tauschii var. strangulata RL 5271), RL 5404 {1240}; (Tetra Canthatch / Ae. tauschii var. meyeri RL 5289), RL 5406 {648, 1240}.

dv: Aegilops squarrosa accessions.

QTL: QRg.ipk.1D was mapped in the Opata/W-7984 (ITMI) mapping population {0255}; Linkage with Gli-D1 implied Rg2. This QTL coincided with a QTL for awn color, QRaw.ipk-1D {0255}.

ma: Xpsp2000-1D ­ 9.3 cM ­ Rg-D1b ­ 21.2 cM ­ Xgwm106-1D{10128}.

Rg-D1c {10378}. Brown or smokey-grey phenotype {729}. Brg {729}.

i: ANK-23 = Novosibirskaya 67*10 / K-28535 {729}.

v: Golubka {10378}; K-28535 {729}; K-40579 {729}; T. aestivum botanical varieties cinereum, columbina, and albiglaucum {10378}.

ma: Xgwm1223-1D ­ 1.5 cm ­ Rg-D1c ­ 13.1 cM ­ Xbarc152-1D {10378}. Xbarc149-1D ­ 6.3 cM ­ Rg-D1c ­ 26.5 cM ­ Xbarc152-1D {10378}.

With the deletion of section 27.2 and its incorporation into 27.1, the following sections' are renumbered as follows:

27.2. Pseudo-black chaff

27.3. Black-striped glumes

27.4. Inhibitor of glume pigment

27.5. Chocolate chaff

27.6. Awn colour

 

28. Grain Hardness / Endosperm Texture

In the preamble paragraph 2 line 5, correct reference from '0380' to '0384'; that is: 'Friabilin is also referred to by the name 'Grain Softness Protein' (GSP) {0384}, and was later shown to be comprised primarily of puroindoline a and puroindoline b {0295}.'

 

29. Grain Quality parameters

In a comprehensive study of 46 quality-related traits in a 'RL4452 / AC Domain' RIL population, 99 QTL involving 41 traits were located in 18 chromosomes {10361}; 14 QTL clustered in the Glu-1B region (50 cM), 20 QTL occurred in the Xwmc617-4D ­ Xwmc48-4D region (30 cM), 10 QTL mapped to the Xgwm130-7D ­ Xwmc405-7D region (14 cM), and 66 QTL were dispersed {10361}.

In a large study of 11 seed quality traits in a 'AC Karma / 87E03-S2B1' DH population, 26 QTL were detected in seven chromosomes {10434}; six were clustered in the Glu-D1 region, and five were clustered in the Rht-D1 region.

QTL analyses of 10 milling and baking quality traits (grain hardness, flour yield, grain and flour protein, alkaline water retention capacity (AWRC), sedimentation properties, cookie properties, lactic acid retention, dough strength, extensibility, and mixograph properties) in the ITMI population grown in Mexico, France, and USA (California) are reported in {10436}.

29.2. Flour, semolina and pasta colour

QTL: W9262-260D3 (low yellow colour) / Kofa (high colour): Four QTL identified on chromosomes 2A (Xgwm425-2A), 4B (Xgwm495-4B), 6B (Xgwm193-6B), and Psy-B1 (chromosome 7BL) {10230}. See also Enzymes: Phytoene synthase.

 

31. Grain Weight

Rye Selection 111 (high GW) / CS (low GW) RIL: two definitive QTL QGw.ccsu-2B.1 and QGw.ccsu-7A.1 and one tentative QTL, QGw.ccsu-1A.1, were detected by CIM analysis{10363}. The chromosome 7A QTL co-located with a QTL for early heading {10363}.

 

39. Height

Add at end of section: Genotypes of Indian semi-dwarf wheats based on the Ellis et al. {0378} markers are given in {10404}.

 

40. Hybrid Lethalities

 

41.1. Hybrid necrosis

Ne1. Following the chromosome location insert:

ma: Xbarc216-5B ­ 8.3 cM ­ Ne1 ­ 2 cM ­ Xbarc74-5B {10334}.

Ne1s. v: Add: Synthetics TA4152-19, TA4152-37, TA4152-44, TA4152-60 {10334}.

Ne2. Following the chromosome location insert:

ma: Xgwm148-2B ­ 6.7 cM ­ Ne2 ­ 3.2 cM ­ Xbarc55-2B {10334}.

Ne2m. v: Alsen {10334}.

 

47.Male Sterility

47.1. Chromosomal

ms1g {10355}. 4BS {10354}. v: Lanzhou Mutant 257A {10354, 10355}.

Insert the following after the present entries:

Photoperiod and/or temperature-sensitive male sterility (PTGMS)

wptms1 {10332}. 2B {10332}. v: BNY-S {10332}.

ma: E: AAG/M: CTA163 ­ 6.9 cM ­ wtms1 ­ 4.8 cM ­ Xgwm374-2B {10332}.

Described as a thermo-sensitive gene (TGMS), giving complete sterility at less than 10°C, but fertile at higher temperatures {10332}.

wptms1 {10333}. 5B {10333}. v: Line 337S wptms2 {10333}.

ma: Xgwm335-5B ­ 4.2 cM ­ wptms1 ­ 24.4 cM ­ Xgwm371-5B {10333}.

wptms1 produces sterility only in the presence of wptms2.

wptms2 {10333}. 2B {10333}. v: Line 337S wptms1{10333}.

ma: Xgwms374-2B ­ 6.9 cM ­ wptms2 ­ 20.9 cM ­ Xgwm120-2B {10333}.

wptms2 produces sterility only in the presence of wptms1.

wptms1 and wptms2 were analyzed and mapped under long photoperiod/high temperatures, but an earlier study indicated a single gene for male sterility under short photoperiod/low temperatures. Although mapping data are different, a possible relationship between wptms2 and wptms1 needs to be resolved.



56. Polyphenol Oxidase (PPO) Activity

Chara (mod high) / WW2449 (low): DH population: PPO activity Associated with Xgwm294b-2A (R2 = 0.82), Xwmc170-2A, Xhwm312-2A, and Xwmc178-2A (R2 > 0.7) {10410}.

A multiplex of markers PPO33 and PPO16 was reliable for selecting genotypes with low PPO activity {10418}.

 

60. Response to Photoperiod

QTL: Trident (early) / Molineux (late): In addition to an effect associated with chromosome 2B, three QTL were designated as follows: QPpd.agt-1AL (Xwmc304 ­ Xgwm497), QPpd.agt-7AS (Xbarc154 ­ Xbarc108) and XPpd.agt-7BS (Xgwm46 ­ Xgwm333) {10382}. The QTL in chromosome 1A is possibly orthologous to Ppd-H2 in barley.

 

61. Response to Salinity

61.2. Salt tolerance

QTL: Opata 85 / W7984. 77 QTL effective at different growth stages were mapped to 16 chromosomes {10384}.


63. Response to Vernalization

Replace the existing material in the Vrn-3 section with the following and eliminate the Vrn-B4 section:

Vrn3.

Vrn-B3 {10421}. [Synonymous with Vrn-B4 {279} and Vrn5, eHi{769,771} {769,779}].
7BS {768,769,771}. s: CS (Hope 7B) Vrn-D1a {768}.

v2: Hope Vrn-A1a {1424}.

ma: Vrn-B3 is completely linked to TaFT and 1 cM distal to Xabc158-7B on the region of 7BS proximal to the translocation with homoeologous group 5 {10421}.

The dominant Vrn-B3 allele in Hope has a retrotransposon insertion in the TaFT promoter (GenBank DQ890165) {10421}. Transformation of the winter wheat Jagger with the dominant Vrn-B3 significantly accelerated flowering {10421}. Different Hope seed sources were heterogeneous for this insertion {10421}. The retrotransposon insertion in the TaFT promoter is present in the CS (Hope 7B) {10421}.

Vrn-H3{10421}. [Synonymous to Sh3].

ma: Completely linked to HvFT and 1 cM distal to Xabc158 on 7HS. Originally mapped incorrectly on 1H based on loose linkage {1455, 1316}.

vrn-B3. v: Chinese Spring Vrn-D1 (GenBank DQ890162) {10421}.

In both wheat and barley Vrn-3 is completely linked with a flowering promoter gene homologous to Arabidopsis FLOWERING LOCUS T (FT) {10421}.

Vrn-B4. Synonymous with Vrn3 and will be deleted {10421}.

 

69. Stem Solidness

Insert introductory note: Solid stem confers resistance to wheat stem sawfly. See also Reaction to Cephus spp.

Qsst.msub-3DL. [Qss.msub-3DL {10395}]. 3DL {10395}.
Associated with Xgwm645-3DL (R2 = 0.31), Xwmc656-3DL (R2 = 0.1), and Xcfd9-3DL (R2 = 0.13) {10395}. This gene acted as an enhancer of Qsst.msub-3BL {10395}.

Tetraploid wheat
Qsf.spa.-3B {10351}. Kyle*2 / Biodur (solid stem) // Kofa (hollow) DH population: Qsf.spa-3BL was located to a 21.3 cM interval flanked by Xgwm247-3B and Xgwm114-3B {10351}. Mapped as a single gene, Xgwm247-3B ­ 6.9 cM ­ Qsf.spa-3B ­ 14.4 cM ­ Xgwm114-3B {10351}. This location was confirmed in two other crosses involving G9580B-FE1C and Golden Ball as the solid stem parents{10351}.

 

72. Tiller Inhibition

tin3 {10329}. 3AmL {10329}. dv: T. monococcum subsp. monococcum TA 4443 = TA4342-96 mutant {10329}.

ma: Xbcd131/Xbcd1431-3A ­ 9.6 cM ­ tin3/Xpsr1205-3A ­ 4.7 cM ­ Xcfa2076-3A {10329}.

 

Proteins

77. Proteins

77.1. Grain protein content

Gpc-B1a. QGpc.ndsu.6Ba {623}.
This allele, fixed in cultivated durum, is a nonfunctional, frame-shift mutation {10438}. A similar nonfunctional allele, or a complete deletion of Gpc-B1, is fixed in hexaploid wheat {10438}.

Gpc-B1b.
Cointinue from 2006 supplement: Gpc-B1, the functional allele {10438} in T. turgidum subsp. dicoccoides, affects senescence and maturity in addition to grain protein content, accelerating senescence and maturity {10298}. Gpc-B1 is a NAC transcription factor designated Nam-B1 {10438}. A paralogous copy of this gene is present in homoeologous group 2 (Nam2).

Add at end of section: Durum: In '3BIL-85 (high protein introgressed from T. turgidum subsp. dicoccoides) / Latino' QTL were detected in chromosomes 2AS (associated with Xcfa2164-2A, R2 = 17%), 6AS (Xp39M37250-6A, R2 = 17%), and 7BL (Xgwm577-7B, R2 = 9%) {10338}.

77.2 Enzymes

77.2.1. Acid phosphatase

Acph-D2 {10407}. tv: Aegilops tauschii {10407}.

77.2.32 Phytoene synthase

Psy1-B1. ma: Xcfa2040-7B ­ 12 cM ­ Psy-B1 ­ 5 cM ­ Xgwm146-7B {10230}.

Psy2-B1. ma: Xgwm312-5B ­ 17 cM ­ Psy-B2 {10230}.

77.2.34. Polyphenol oxidase

Ppo-A1 {10386}. PPO-2A {10385}. 2AL {10385}.

ma: Detected with STS markers PPO18 (10385) and PPO33 {10418}. Xgwm312-2A ­ 1.4 cM ­ Ppo-A1 ­ 5.8 cM ­ Xgwm294-2A {10385}.

Ppo-A1a {10386}.PPO-2Aa EF070147{10385}.

v: Zhongyou 9507 {10385,10386}; others {10386}.

ma: 876 bp ­ wheats with this allele tend to have lower PPO activity {10385, 10386}.

Ppo-A1b {10386}. PPO-2Ab EF070148 {10385}.

v: CA 9632 {0758,10386}, others {10386}.

ma: 685 bp (AY596268) ­ wheats with this allele tend to have lower PPO activity {0758, 10386}.

Ppo-D1 {10386}. 2D {10386}. ma: Detected with primers PPO16 and PPO29. Xwmc41-2D ­ 2.0 cM ­ Ppo-D1 {0759, 10418}.

Ppo-D1a {0759}. EF070149 {10384}.

v: Zhonghou 9507 {0759}; others {0759}.

ma: 713 bp with primer PPO16; wheats with this allele tend to have higher PPO activity {0759}.

Ppo-D1b {0759}. EF070150{0759}.

v: CA 9632 {0759}; others {0759}.

ma: 490 bp with primer PPO29; wheats with this allele tend to have higher PPO activity (0759).

74.2.34. Protein disulfide isomerise (E.C. 5.3.4.1).

Pdi-A1 [{10422}]. 4AL {10422}. v: {10422}.

Pdi-B1 [{10422}]. 4DS {10422}. v: {10422}.

Pdi-D1 [{10422}]. 4BS {10422}. v: {10422}.

The genes for PDI and their promoters were sequenced in {10423}. A related sequence on 1BS was shown to be a partial, nonexpressed copy in {10424}, but not detected in {10409}. PCR-RFLP markers for [TaPDI-4A] and [TaPDI-4B] were designated [Xvut(PDI)-4A] and [Xvut(PDI)-4B] in {10409}. These also were closely associated with Germin (oxalate oxidase {10441}) genes (10409).

Endosperm Storage Proteins

77.3.1.1 Glu-1

Glu-B1

Add:

Glu-B1bn [{10425}]. 7+19 {10425}. v: Triticales: Lasko, Dagno, Tewo, Vision, Dato {10425}.

Glu-B1bo [{10425}]. 7+26 {10425}. v: Triticales: Presto, Modus {10425}.

The number 26 was also used to designate a subunit encoded by Glu-A1k and Glu-A1-1k.

Glu-D1

Add:

Glu-D1br [{10426}]. 5*t+10.1t {10426}. tv: Ae. tauschii TD 81 {10426}.

Glu-E1

HMW glutenin y-type subunit Ee1.5 encoded by this locus was sequenced {10439} and compared with other y-type subunits, particularly subunit 1Dy10. It has major deletions in its middle region and is one of the smallest known HMW-glutenin subunits. It has an additional Cys residue in the middle of the repetitive domain, but lacks one Cys residue commonly found towards the end of this domain. These changes may influence inter- or intramolecular disulphide bond formation.

Add after the Glu-V2 section:

Glu-Ta1 {10449}. al: Taenitherum crinitum PI 204577 {10449}.

Glu-Ta1a [{10449}]. al: Ta. crinitum PI 204577 {10449}.

Glu-Ta1b [{10449}]. al: Ta. crinitum PI 205590 {10449}.

Glu-Ta1c [{10449}]. al: Ta. crinitum PI 561094, Ta. asperum PI 561091, PI 561092 {10449}.

Glu-Ta1d [{10449}]. al: Ta. caput-medusae PI 598389 {10449}.

Glu-Ta1e [{10449}]. al: Ta. caput-medusae PI 577708 {10449}.

Glu-Ta1f [{10449}]. al: Ta. caput-medusae PI 577710 {10449}.

Each allele identified to date encodes two subunits, an x-type and a y-type. The x-type subunits are slower or equal in mobility to subunit Dx2 of wheat, whereas the y-type subunits are faster than subunit Dx12 {10449}. Phylogenetic analysis based upon the sequence of two genes designated Tax and Tay isolated from Ta. crinitum PI 204577 suggest that the Tax subunit was most closely related to Ax1, Cx (Ae. caudata), Ux (Ae. umbellulata) and Dx5, and the Tay subunit to Ay, Cy, and Ry (Secale cereale) {10449}.

Add at the end of the Glu-D1 section:
Subunit 10.1t possesses a mobility slightly lower than subunit 10 in SDS-PAGE, and its deduced amino acid sequence is similar to subunit 12 (eight amino acid differences) {10426}; the authors used the complete coding sequence to make phylogenetic comparisons with 19 other subunits including both x-type and y-type subunits and concluded that the Glu-1 gene duplication event probably occurred about 16.83 million years ago.

77.5.6 Waxy proteins

Following the formal gene lists, the paragraph 'Various hard and soft wheats ................' Add: 'Fifteen percent of Chinese wheats possessed Wx-B1 null alleles {10357}.'

To the string of references in the following paragraph add: ',10437'}.

77.5.8. Puroindolines and grain softness protein

Pina-D1. After CS, add: (GenBank DQ363911) {03108}. Capitole (GenBank X69914) {03110}.

Pina-D1a. add: v: Capitole (GenBank X69914) {03110}; Renan (GenBank CR626934) {10440}.

dv: Ae. tauschii unidentified accession (GenBank AJ249935) {03103}; Ae. tauschii CPI 10799 (GenBank CR626926) {10440}.

Pina-D1b. add: i: PI 644080 (Alpowa / ID377s // 7*Alpowa) {10429}.

v: Glenlea (GenBank AB262660) {10431}.

This allele is now defined as a 15,380 bp deletion versus other possible puroindoline a nulls {10428, 10391}.

Pina-D1c. add: dv: Ae. tauschii TA10 (GenBank AY649746) {03108}.

Pina-D1d. add: dv: Ae. tauschii TA1704 (GenBank AY649744) {03108}.

Pina-D1k. add: homonym: Pina-D1b/Pinb-D1h(t):

v: Bindokku {10305}; Cheyenne-A {10305}; Chosen 68 {10305}; Gaiyuerui {10316}; KT020-584 {10432}; Saiiku 18 {10305}; Saiiku 44 {10305}; Sifangmai {10316}; Tachun 2 {10316}; ZM2851 {10316}; ZM2855 {10316}.

This allele is currently used to denote a large deletion of undetermined size that involves Pina-D1, Pinb-D1, and Gsp-D1 {10077}. The deletion of both puroindolines is associated with harder kernel texture than other known puroindoline hardness alleles {10077, 10305, 10432}.

Pina-D1m. Revise ref. {101208} in the 2005 Supplement to {10208}.

Pina-D1n v: Hongheshang, add: (GenBank EF620907) {10208}.

v: Xianmai, add: (GenBank EF620908) {10208}.

New entries:

Pina-D1q {10316}. v: U29 (GenBank AB181238) {10316}; u-27 (homonym 'a2', Pina-D1p) {10316}.

Pinb-D1. Change '(GenBank X69914)' to '(GenBank X69912)'.

Pinb-D1b. add: i: PI 644081 (Alpowa / ND2603 // 7*Alpowa) {10429}.

v: Cheyenne (GenBank DQ363914) {10315}; Renan (GenBank CR626934) {10440}.

Pinb-D1c. add: i: PI 644082 (Alpowa / Red Bobs // 7*Alpowa) {10429}.

Pinb-D1d. add: i: PI 644083 (Alpowa / Mjølner // 7*Alpowa) {10429}.

add: v: Soissons (homonym 'b1') {10433}.

Pinb-D1e. add: i: PI 644084 (Alpowa / Canadian Red // 7*Alpowa) {10429}.

add: v: Yunxianxiaomai {10427}.

Pinb-D1f. add: i: PI 644085 (Alpowa / Sevier // 7*Alpowa) {10429}.

add: v: Abyssinia AV12.4 {10430}.

Pinb-D1g. add: i: PI 644086 (Alpowa / Andrews // 7*Alpowa) {10429}.

Pinb-D1h. add: dv: TA10 (GenBank AY649748) {03108} CPI110799 (GenBank AY159804) {10037}.

Pinb-D1i. add: dv: Ae. tauschii TA1704 and TA2381 (GenBank AY649747) {03108, 10315}; Ae. tauschii isolate Q03-002 (GenBank DQ257553) (referred to as allele 2) {10314}; Ae. tauschii CPI 110799 (GenBank CR626926) {10440}. Q03-002, TA1704, and TA2381 were incorrectly assigned Pinb-D1w in the 2006 supplement.

Pinb-D1j. add: dv: Ae. tauschii TA1691 (GenBank AY251946) {03108}.

Pinb-D1l. add: Note: {10208} reported Pinb-D1b in Gaocheng 8901.

Pinb-D1p. Change reference '{10121}' in three places under this heading to '{10208}'.
Add note: The single nucleotide A deletion occurs in the AAAA at position 210-213 and is assigned to the last position at 213.

add: homonym: Pinb-D1i(t) {10305}.

v: Qindao landrace 1{10305}; Qitoubai {10305}; Shijiazhuang 34 {10305}; Zigan {10305}.

This homonym sequence (allele) was incorrectly assigned Pinb-D1v in the 2006 supplement.

add: homonym: Pinb-D1z, 'b3', Pinb-D1u.

v: Dahuangpi (GenBank AY581889) {10316}.

Pinb-D1q. v: Jingdong 11 (GenBank EF620909){10313}.

This allele was used originally (2004 Supplement) in combination with Pina-D1k and Gsp-D1i to denote the large deletion that encompasses Pina-D1, Pinb-D1, and Gsp-D1 {10077} (cf. Pina-D1k). The haplotype nomenclature of this deletion is under review; Pinb-D1q is currently used to denote the C-to-G SNP at position 218 {10313}.

Pinb-D1t. add after Guangtouxiamai: (GenBank EF620910).

Pinb-D1u. add after Tiekemai: (GenBank EF620911).

Pinb-D1v. v: Tachun 3 {10316}, homonym 'b5' {10316}.

The original assignment of this allele in the 2006 supplement was incorrect; the sequence/varieties in {10305} are Pinb-D1p as listed above for that allele. The following variety/sequence was assigned Pinb-D1y in the 2006 supplement; but the original assignment of {10316} is now unchanged.

Pinb-D1w add: v: Jing 771 (GenBank AY640304, AB180737){10316}, homonym 'b4' {10316}.

This variety/sequence was incorrectly assigned Pinb-D1x in the 2006 supplement; the original assignment of {10316} is now unchanged.

Ae. tauschii isolate Q03-002 (GenBank DQ257553) (referred to as allele 2) {10314}; Ae. tauschii TA1704 and TA2381 (GenBank AY649747){10315}; Ae. tauschii CPI 110799 (GenBank CR626926) {10440} were incor rectly assigned this allele in the 2006 supplement; they are Pinb-D1i as listed above.

Pinb-D1x.

The original assignment of this allele in the 2006 supplement was incorrect; the sequence for Jing 771 {10305} is Pinb-D1w as listed above. Currently there is no assignment for this allele.

Pinb-D1y.

The original assignment of this allele in the 2006 supplement was incorrect; the sequence for Tachun 3 in {10305} is Pinb-D1v as listed above. The original assignment of {10316} is now unchanged. Currently there is no assignment for this allele.

Pinb-D1z.

This allele/sequence is identical to, and listed under Pinb-D1p. Currently there is no assignment for this allele.

New entries:

Pinb-D1u {10427}. v: Tiekamai) {10427}; 31 hard Yunnan endemic wheats (T. aestivum subsp. yunnanense King) {10427}.

Possesses a G deletion at position 127 leading to a shift in ORF {10427}.

Pinb-D1aa {10391}. v: Changmangtoulongbai (GenBank EF620912) {10391}; Hongtutou 1 {10391}; Hongtutou 2 {10391}.

Pinb-D1ab {10432}. v: KU3062 {10432}; KU3069 {10432}.

77.5.9. Grain softness protein

Gsp-D1i. Change reference '{10120}' to '{03105}' in two places.

77.7.1 Polygalacturonidase-inhibiting proteins

PGIPs are LRR proteins involved in plant defence as inhibitors of fungal polygalacturonases {10390}.

Pgip1 {10390}. 7BS {10390}. v: CS ditelo 7BL {10390}.

v2: Chinese Spring Pgip2 {10390}.

tv: Langdon {10390}.

Pgip2 {10390}. 7DS {10390}. v: CS ditelo 7DL {10390}.

v2: Chinese Spring Pgip1 {10390}.



Pathogenic Disease/Pest Reaction

 

79. Reaction to Blumeria tritici

79.1. Designated genes for resistance

33 NILs, including 22 resistance genes and three genetic backgrounds are listed in {10389}.

Pm2. ma: Xcfd81-5D - 2.0 cM - Pm2 {10366}.

Pm3.

Add note at beginning of section: Following the cloning and sequencing of Pm3d {10064}, six other alleles were sequenced {10405}. The Chinese Spring (susceptible) allele, Pm3CS, considered to be ancestral and present in many hexaploid and tetraploid wheats was also transcribed {10405, 10406}. Other wheats possessed a truncated sequence (e.g., Kavkaz), or were null {10405, 10406}. Unique markers were developed for all eight transcribed alleles and for individual alleles {10405}.

Pm3b. Pm3j{10405}.

Pm3c. Pm3i {10405}. Sequence DQ251587, DQ517917 {10405}.

Pm3d. Pm3h {10405}. Sequence DQ251488, DQ517518 {10405}.

Pm3e.

Pm3g. Sequence DQ251489, DQ517919 {10405}.

Pm3h. Delete and add to Pm3d.

Pm3i. Delete and add to Pm3c.

Pm3j. Delete and add to Pm3b.

Genotype list for Pm3: Add: {',10405, 10406'}

Pm35 {10342}. 5DL {10342}. v: NC96BGTD3 = PI 603250 = Saluda*3 / TA2377 {10342}.

dv: Ae. tauschii ssp. strangulata TA2377 {10342}.

ma: Xcfd26-5D ­ 11.9 cM ­ Pm35 {10342}.

Pm36 {10356}. 5BL {10356}. tv: MG-FN14999, a durum backcross line 5BIL-29 {10356}: T. turgidum subsp. dicoccoides MG29896 {10356}.

ma: Less than 15 cM linkage with three SST and one EST-SSR markers on chromosome 6BL {10356}.

Pm37 {10372}. 7AL {10372,10274}. v: NC99BGTAG11 = T. timopheevii subsp. ameniacum {10372}.

tv: PI 427315 = T. timopheevii subsp. ameniacum {10372}.

ma: Pm37 (PmAG11) was about 15 cM proximal to a cluster of markers that earlier co-segregated with Pm1 {10372}. A cross indicated linkage between Pm37and Pm1 {10372}.

Pm38 {10373}. Adult plant resistance. 7DS {10374}.

i: RL6058 = Tc*6 / PI58458 {10374}.

v: Lines with Lr34/Yr18 ­ see Reaction to Puccinia triticina, Reaction to Puccinia striiformis.

ma: Xgwm1220-7D ­ 0.9 cM ­ Lr34/Yr18/Pm38 ­ 2.7 cM {10374}. See also Reaction to Puccinia triticina, Reaction to Puccinia striiformis.

79.3. Temporary designated genes for resistance to Blumeria graminis

Mlm3033{10393}. 7AL {10393}. dv: T. monococcum subsp. monococcum TA2033 {10393}.

ma: Xmag1757/Xmag2185 ­ 2.7 cM ­ Mlm2033/Xmag2185 ­ 1.3 cM ­ Xgwm344-7A {10393}; Xmag1757 ­ 5.9 cM ­ Mlm2033/mag2185/Xgwm344/Xgwm146-7A ­ 4.7 cM ­ Xmag1986 {10393}; Xmag1757/Xmag1714/Xmag1759 ­ Mlm2033 ­ 0.9 cM ­ Xmag2185/Xgwm344-7A {10393}.

Mlm80 {10393}. 7AL {10393}. dv: T. monococcum subsp. aegilopoides M80 {10393}.

ma: Xmag1757/Xmag1759 ­ 3.6 cM ­ Mlm80 ­ 0.7 cM ­ Xmag2166/Xgwm344-7A {10393}.

Mlm2033 and Mlm80 appeared to be allelic and their relative locations suggest they are allelic with Pm1 {10393}.

PmY39 {10367}. 2U(2B) {10367}. su: Laizhou 953*4 / Am9 (Am9 = Ae. umbellulata Y39 / T. turgidum subsp. carthlicum PS5) {10367}.

dv: Ae. umbellulata Y39 {10367}.

ma: Associated with 2U markers Xgwm257, Xgwm296, and Xgwm319 {10367}.

79.4. QTL for resistance to Blumeria graminis

Add at end of section:

Fukuho-Komugi / Oligoculm, DH population. QTL for adult-plant resistance located on 1AS (R2 = 22%, Pm3 region, Xgdm33 ­ Xpsp2999), 2BL (R2 = 8%, Xwmc877.1 ­ Xwmc435.1), and 7DS (R2 = 10%) derived from Fukuho-komugi, and 4BL (R2 = 6% at one of two sites, Xgwm373-Xgwm251) from Oligoculm {10335}. The QTL on 7DS, flanked by Xgwm295.1-7D and Ltn, is likely to be Lr34/Yr18.

CI 13227 (S) / Suwon 92 (R), SSD population: APR (field resistance) was closely associated with Hg, Xpsp2999-1A and Xpm3b.1 and Xpm3B.2 designed from the Pm3b sequence {10340}.

RE9001 (R) / Courtot (S) RIL population: QPm.inra.2B (R2 = 10.3 ­ 36.6 %), in the vicinity of Pm6, was consistent over environments {10360}. Eleven QTL, detected in at least one environment were identified by CIM {10360}.

 

XX. Reaction to Cephus cinctus

Pest: Wheat stem sawfly. North American species C. cinctus; European species C. pygmeus. Resistance to wheat stem sawfly is associated with solid stem (see also: Stem solidness).

Tetraploid wheat

Qsf.spa-3B {10351}. See Stem Solidness.


81. Reaction to Diuraphis noxia

Dn4. i: Yumar {10397}.

v: Ankor {10397}; Prairie Red {10397}.

Dn5. Add ref 10396 to 7DL.

Add note: 'Genetic mapping indicated that Dn5 is located in chromosome 7DS, but cytological analysis showed it was located in 7DL {10396}. It also was suggested {10396} that the Palmiet Dn5 line {0004} may not have Dn5 {10396}.'.

 

82. Reaction to Fusarium spp.

82.1. Disease Insert: 'Fusarium head blight' as an additional disease name. Fusarium head scab, scab

Fhb1 {add: ',10403'}. i: HC374 / 3*98B69-l47 {10214}; Sumai 3*5 / Thatcher {10214}.

v: HC-l47-126 {10444}.

v2: BW278 Fhb2 {10225}; Sumai 3 Fhb2 10314}.

ma: XSTS3B-80 ­ 0.2 cM ­ Fhb1 ­ 1.1 cM ­ XSTS3B-142 {10214}. Placed in a 1.2-cM interval flanked by XSTS3B-189 and XSTS3B-206 {10403}.

The relationship of Fhb1 to Fhs1 or Fhs2 {1096}is unknown.

Fhb2. Change '6B' to '6BS'. v: pbE85 {10444}.

v2: Sumai 3 Fhb1 {10225}.

ma: Change present entry to: 'gwm133-6B ­ 4 cM ­ Fhb2 ­ 2 cM ­ Xgwm644-6B {10225}.'

Add note: The relationship of Fhb2 to Fhs1 or Fhs2 {1096}is unknown.

In the third paragraph following the listing of Qfhs.ifa-5A (relates to Ning 7840 / Clark) add: Three RGA sequences putatively assigned to chromosome 1A explained 3.37­12.73% of the phenotypic variation in FHB response among F7 and F10 populations {10364}. STS marker FHBSTS1A-160 was developed from one of the RGA.

Following the entry for 'Frontana / Remus' add:

'Frontana (MR) / Seri 82 (S)', F3 and F3:5 populations: QTL were located in chromosomes 1BL (R2 = 7.9%), flanked by AFLP markers, 3AL (R2 = 7.7%), flanked by Xgwm720-3A and Xgwm121-3A , 7AS (R2 = 7.6%), flanked by an AFLP and Xgwm233-7A {10349}.

Following 'Wangshuibai /Alondra' add:

'Wangshuibai / Annong 8455': RIL population: CIM analysis over 2 years detected QTL for FHB response on chromosomes 3B (R2 = 0.17) and 2A (R2 = 0.12), and for DON levels in 5A (R2 = 0.13), 2A (R2 =0.85), and 3B (R2 = 0.06) {10447}. The regions involved were Xgwm533.3B ­ Xbarc133-3B, Xgwm425-2A, and Xgwm186-5A ­ Xgwm156-5A {10447}.

In a reciprocal backcross analysis of' Chris monosomics / Frontana', Frontana chromosomes 3A, 6A, and 4D reduced visibly diseased kernels, kernel weight and DON content, whereas Frontana chromosomes 2A, 2B, 4B, and 7A increased the same traits {10398}.

At end of section add:

Tetraploid wheat

Qfhs.crc-2BL {10445}. tv: Strongfield {10445}.

ma: Spanning 16 cM, this QTL peaking on Xgwm55-2B explained 23% of the phenotypic variation {10445}.

Qfhs.ndsu-3AS {10402}. sutv: LDN­DIC3A {10402}.

tv: T. turgidum subsp. dicoccoides {10402}.

ma: Located in an interval spanning 29.3 cM, this QTL accounted for 37% of the phenotypic variation; peak marker, Xgwm2-3A {10402}.

Qfhs.crc.6BS {10445}. tv: T. turgidum subsp. carthlicum cv. Blackbird {10445}.

ma: Spanning 23 cM and peaking on Xwmc397, this QTL accounted for 23% of the phenotypic variation {10445}.

Qfhs.fcu-7AL {10401}. sutv: LDN­DIC 7A {10401}.

tv: T. turdidum subsp. dicoccoides PI 78742 {10401}.

ma: Located in an interval spanning 39.6 cM, this QTL accounted for 19% of the phenotypic variation in a RIL population of 'Langdon / LDN­DIC 7A'; nearest marker Xbarc121-7AL {10401}.

'Strongfield / T. turgidum subsp. carthlicum (Blackbird)': Field resistance identified in chromosome 2BL (Xgwm55-2B), and 6BL (Xwmc397-6B) (coincident with Fhb2 {10225}).

 

82.2. Disease: Crown rot caused by Fusarium pseudograminearum, F. culmorum and other Fusarium species.

Add: W21MMT70 / Mendos: DH population: three consistent QTL for seedling resistance were identified with CIM; there were located in chromosomes 5D and 2D (resistance alleles from W21MMT70) and 2B (resistance allele from Mendos) {10358}.

83. Reaction to Heterodera avenaeWoll.

Cre5. v: Continue present text with: However a contribution of the Cre5 region was detected in 'Trident / Molineux' {10343}.

ma: Associated with the Xgwm359-2A (R2 = 8%) - Xwmc177-2A (R2 = 7%) region in 'Trident / Molineux' {10343}.

Cre8. ma: Associated with the Xgdm147-6B (R2 =24%) - Xcdo247-6B (R2 = 12%) region in 'Trident / Molineux' {10343}.

QTL: Qcre.srd-1B was located to the Xwmc719-1B (R2 = 12%) ­ Xgwm140-1B (R2 = 12%) region in 'Trident / Molineux' (10343).

 

85. Reaction to Mayetiola destructor

H13. 6DS {10388}. v: PI562619 {10388}; SW34 = Langdon / Ae. tauschii RL 5544 {10388}.

ma: Xcfd132-6D ­ 3.7 cM ­ H13 {10388}.

H22. 1D {1199}, 1DS {10381}.

v: KS85WGRC01 = Ae. tauschii TA1644 / Newton // Wichita {1199}; PI572542 {10388}.

ma: Xgdm33-1D ­ 1.0 cM ­ H22 ­ 0.3 cM ­ Xhor2KV-1D ­ 0.5 cM ­ Xgpw7082-1D {10381}.

H23. v: PI535766 {10388}.

H24. v: PI535769 {10388}.

H26. 3DL {10388}. v: SW8 = Langdon / Ae. tauschii Clae 25 {10388}.

ma: Xcfd211-3D ­ 7.5 cM ­ H26 ­ 2.9 cM ­ Xwgc7330-3D ­ 4.0 cM ­ Xgwm3-3D {10388}.


84. Reaction to Mycosphaerella graminicola

Stb6. v: Amigo {10448}; Arina {10448}; Amada {10448}; Atlas 66 {10448}; Ble Seigle {10448}; Bon Fermier {10448}; Chinese Spring {10448}; Gene {10448}; Heines Kolben {10448}; Hereward {10448}; Poros {10448}; Senat {10448}; Shafir m{10448}; Tadinia {10448}.

v2: Bulgaria 88 Stb1 {10448}. Veranopolis Stb 2 {10448}. Israel 493 Stb3{10448}.

Stb10. 1D. Kavkaz-4500 L.6.A.4.

Stb11. 1BS. v: TE9111, JIC W 9996.

Stb12. 4AL. Kavkaz-4500 L.6.A.4.

Stb13 {10347}. Confers resistance to Canadian cultures MG96-13 and MG2 {10347}.

7BL {10347}. v: DH line 90S05B*01 {10347}; DH line 98S08C*03 {10347}.

v2: Salamouni Stb14 {10347}.

ma: Xwmc396-7B ­ 9 cM ­ Stb13 10347}; Xwmc396-7B ­ 7 cM ­ Stb13 {10347}.

Stb14 {10348}. Confers resistance to Canadian isolate MG2 but not to MG96-13 {10347}.

3BS {10348}. v: DH line 98S08A *09 {10348}.

v2: Salamouni Stb13 {10347}.

ma: Xwmc500-3B ­ 2 cM ­ Stb14 ­ 5 cM ­ Xwmc632-3B {10348}.

Stb15 {10341}. Confers resistance to Ethiopian culture IPO88004 {10341}.

6AS {10341}. v: Riband {10341}.

v2: Arina Stb6 {10341}.

ma: Stb15 ­ 14 cM ­ Xpsr904-6A {10341}.

QTL: A weak QTL, QStb.psr-7D.1, giving partial resistance to Portuguese isolate IPO92006, was detected in the Xcdo475b-7B ­ Xswm5-7B region in chromosome 7DS {10341}.

 

89. Reaction to Phaeosphaeria nodorum (E. Muller) Hedjaroude (anamorph: Stagonospora nodorum (Berk.) Castellani & E.G. Germano).

 

89.2. Sensitivity to SNB toxin

Replace or update present entries with the following:

Snn1 {10008}. Sensitivity to toxin SnTox1 is dominant {10008}. 1BS {10008}.

s: CS- DIC 1B {10008}.

v: CS {10008}; Grandin {10008}; Kulm {10008}; ND 495 {10008}.

ma: Snn1 ­ 4.7 cM ­ XksuD14-1B {10008}.

snn1. v: Br34 {10008}; Erik {10008}; Opata 85 {10008}.

QTL: ITMI population: A major QTL, coinciding with Snn1, was located in chromosome 1BS (R2 = 0.58, 5 days after inoculation); minor QTL were found in 3AS, 3DL, 4AL, 4BL, 5DL, 6AL, and 7BL (10009).

 

90. Reaction to Puccinia graminis

Sr31. ma: A SCAR marker, SCSS30.2576 was developed {10359}.

 

91. Reaction to Puccinia striiformis

91.1. Designated genes for resistance to stripe rust

Yr3a. i: Taichung 29*6 / Vilmorin 23 {10370}. Yr3 (YrV23) ­ Xwmc356-2B, 9.4 cM {10370}.

Yr5. ma: Co-segregation with AFLP marker S19N93-140 and 0.7 cM with S23M41-310 {10435}.

Yr7. i: Taichung 29*6 / Lee {10371}.

ma: Yr7 ­ Xgwm526-2B, 5.3 cM {10371}.

Yr9. ma: Yr9 ­ 3.7cM ­ Xgwm582-1BL {10365}.

Yr15. v: Boston {0330}; Cortez {0330}; Legron {0330}.

Yr17. v: Kris {10336}.

ma: Characterized by null alleles for Xwmc382-2A and Xwmc407-2A {10336}.

Yr24. YrCH42. v: Chuanmai 42 {10339}; Synthetic 769 {10339}.

tv: Decoy 1 {10339}.

ma: Xbarc187-1B ­ 2.3 cM ­ Yr24 ­ 1.6 cM ­ Xgwm498-1B {10339}.

Yr24 is identical to Yr26 {10339, 939}.

Yr26.

Yr26 is identical to Yr24 {10339, 939}.

Yr32. v: Deben {10336}.

Yr34. Change to: v: AUS22857 {10040}; WAWHT2046 = AUS91389 {10040}.

ma: Change current entry to: 'Xgwm410.2-5A ­ 8.2 cM ­ B1 ­ 12.2 cM ­ Yr34 {10040}'.

Yr39 {10416}. HTAP resistance. 7BL {10416}.

v: Alpowa {10416}.

ma: Closely linked to several RGAP markers {10416}.

Yr40 {10328}. Derived from Aegilops geniculata. 5DS (5DL·5DS-T5MSG {10328}.

v: TA5602 {10328}; TA5603 {10328}.

al: Ae. geniculata (= ovata) (UsUsMgMg ) TA10437 (10328).

ma: Completely linked with distinctive alleles of Gsp, Xfbb276, and Xbcd873 {10328}.

Completely linked with Lr57 {10328}.

At end of section add: Genotype list: Chinese common wheats {10369}.

Yr1Ap {10416}. 1BS {10416}. v: Alpowa Yr39{10416}.

ma: YrAlp ­ 15.2 cM ­ Xgwm18-1B ­ 1.1 cM ­ Xgwm11-1B (10416) and more closely linked to RGAP markers {10416}.

YrSp {10352}. YrSp {10353}. 2B {10352, 10353}, probably 2BL.

i: 'Avocet*3 / Spaldings Prolific' {10353}; 'Taichung*6 / Spaldings Prolific' {10352}.

v: Spaldings Prolific {10352, 10353}.

ma: YrSp ­ Xwmc-2B 12.1cM {10352}.

YrV23 {10370}. Presumed to be Yr3a. v: Vilmorin 23 {10370}.

YrZH84 {10331}. 7BL {10331}. v: Annong 7959 {10331}; Zhoumai 11 {10331}; Zhoumai 12 {10331}.

v2: Zhou 8425B Yr9 {10331}.

ma: Xwmc276-7B ­ 0.6 cM ­ Xcfa2040-7B ­ YrZH84 ­ 4.8 cM ­ Xbarc32-7B {10331}.

Yrns-B1. ma: As a QTL, Yrns-B1 was located in a 3 cM interval between Xgwm493-3B and Xgwm1329-3B {10383}.

91.3. Stripe rust QTLs

Multi-cross analyses detected QTL in chromosomes 2AS (Yr17), 2AL (Yr32), 2BL (Yr5/Yr7) region, and 6BL {10336}.

'Avocet S / Pavon76': QTL identified in 1BL (Xgwm259), 3BS (PstAATMseCAC2), 4BL (Xgwm495), 6AL (Xgwm617), 6BL (PstAAGGMseCGA1) {10443}.

 

92. Reaction to Puccinia triticina

92.1. Genes for resistance

Lr1. ma: Add: 'Mapped to a 0.7 cM interval in Ae. tauschii and a 0.075 cM interval in wheat {10408}.

A candidate gene for Lr1, Lr1RGA1, encoding a CC-NBS-LRR protein co-segregated with Lr1 {10408}.'.

Lr3c. v: Blava {10345}.

Lr10. ma: Lr10 was cloned ­ it has a CC-NBS-LRR structure, syn, T10rga1 GeneBank AY270157 {10442}.

Lr17a. v: Jagger {10346}.

Lr17b. v2: Contra Lr13 {10345}; Kalasz Lr13 {10345}; Riband Lr13 {10345}; Sarka Lr13{10345}.

Lr19. ma: RAPD, SCAR and SSR markers co-inciding with, or flanking, Lr19 in a derivative of Knott's Agatha Mutant 28 (C80.1) were reported in {10379}.

Lr21. Lr40 {1200, 10415}.

v2: WGRC16 = 'TAM107*3 / Ae. tauschii TA 2460' Lr39 {220, 10415}.

dv: Ae. tauschii TA2460 Lr39 {220, 10415}.

ma: Xksu-1D is part of Lr21 {10420}. Lr21 was cloned and shown to have a NBS-LRR structure {10420}.

Lr22a. ma: Xgwm296-2DS ­ 2.0 cM ­ Lr22a {10446}.

Lr24. ma: SCAR markers were developed in {10368}

Lr34. v: Arina*3/Forno {10380}; Bezostaya {10387}; Condor {10387}; Cook {10387}; Forno {10066, 10380, 10387}; Fukuho-Komugi {10387}; Otane {10387}.

ma: Lr34XsfrBF473324 ­ 0.5 cM ­ Xsfr.cdo475-7D ­ 0.7 cM ­ Xswm10-7D {10380}. A 150-bp allele (b) of STS CsLV34, derived from wEST BQ788742 was identified in most wheats with Lr34; CsLV34a ­ 0.4 cM ­ Lr34 {10387}.

Lr39. Add existing v: and dv: entries from Lr41 and add ',10415' after each reference.

v2: WGRC16 = 'TAM107*3 / Ae. tauschii TA 2460' Lr39 {220, 10415}.

dv: Ae. tauschii TA2460 Lr21 {220, 10415}.

Lr40 {1200}. Deleted. Shown to be Lr21 {10415}.

Lr41 {215}. Deleted. Shown to be Lr39 {10415}.

Lr43 {218}. Deleted. WGRC16 shown to have Lr21 and Lr39 {10415}.

Lr57 {10328}. Derived from Aegilops geniculata. 5DS (5DL·5DS-T5MSG {10328}.

v: TA5602 {10328}; TA5603 {10328}. Since TA5602 and TA5603 are fourth backcross selections to WL711, they likely also carry Lr13.

al: Ae. geniculata (= ovata) (USUSMGMG TA10437) {10328}.

ma: Completely linked with distinctive alleles of Gsp, Xfbb276 and Xbcd873 {10328}.

Completely linked with Yr40 {10328}.

Lr58 {10375}. Derived from Aegilops triuncialis. 2BL {10375} = T2BS·2BL-2tL(0.95).

v: TA5605 = WL711*4 / Ae. triuncialis TA10438 Lr13 {10375}.

al: Ae. triuncialis TA10438 {10375}.

ma: TA5605 possesses Ae. triuncialis alleles of RFLP markers XksuH16, XksuF11 and Xbg123 in the terminal region of chromosome 2BL {10375}.

Lr59 {10399}. 1AL (probable centric fusion {10399}.

v: Line 0306 {10399} = Ae. peregrina-680 / 2*CS // 5*W84-17 {10399}.

al: Ae. peregrina (UUSS, 2n = 28) 680 {10399}.

Lr60 {10400}. LrW2 {0305}. 1DS {10400}.

v: RL6172 {0305} = Thatcher*3/V860.

At the end of section: Under Genotype lists; to references after European cultivars add: {',10345'}.

92.3. QTLs for reaction to P. triticina

Avocet S / Pavon76: QTL identified included: 1BL (PstAFAMseCAC1&2), 4BL (Xgwm368), 6AL (Xgwm617), and 6BL (PstAGGMseCGA1) {10443}.

 

93. Reaction to Pyrenophora tritici repentis (anomorph: Drechlera tritici-repentis)

93.1. Insensitivity to tan spot toxin

tsn1. ma: Replace the last entry with: Xfgcg7-5B ­ 0.4 cM ­ Tsn1/Xfcg17-5B ­ 0.2 cM ­ Xfcg9-5B {10207}; Xfcg17-5B ­ 0.2 cM ­ Tsn1 ­ 0.6 cM ­ Xfcg9-5B {10207}; Xfcp1-5B and Xfcp2-5B delineated Tsn1 to an interval of about 1 cM {10337}. Tsn1 was placed in a 2.1 cM region spanned by XBF483506 and XBF138151.1/XBE425878/Xfcc/XBE443610 {10413}.

Add note: According to {10376} the same dominant allele, presumably tsn1, conferred resistance to chlorosis induced by races 1 and 3 in cultivars Erik, Hadden, Red Chief, Glenlea and 86ISMN 2137 in crosses with 6B-365.

Tsn2 {10344}. Conditions resistance to race 3 {10344}. 3BL {10344}.

sutv: LDN (DIC-3B) {10344}.

tv: T. turgidum no. 283, PI 352519 {10344}; T. turgidum subsp. dicoccoides Israel-A {10344}.

ma: Identified as a QTL in region Xgwm285-3B - Xwmc366.2-3B (R2 = 91%) {10344}. Also classified as a single gene: Xgwm285-3B ­ 2.1 cM ­ tsn2 ­ 15.2 cM ­ Xwmc366.2-3B {10344}.

tsn3 {10394}. 3D {10394}, 3DS {10419}.

v: XX41 = [Langdon / Ae. tauschii CI 00017] {10394}; XX45 {10394}; XX110 {10394}.

dv: Ae. tauschii CI 00017 {10394}.

ma: Xgwm2a ­ tsn3, 15.3 cM, 14.4 cM, and 9.5 cM in CS / XX41, CS / XX45, and CS /XX110, respectively {10419}.

Resistances in XX41 and XX110 were recessive whereas that in XX45 was dominant ­ all three were hemizygous-effective {10394}. The genes were given different temporary designations {10394, 10419}, but all will be considered to have a common gene until they are shown to be different.

tsn4 (10350). Resistance to race 1 (culture ASC1a) {10350}. 3A {10350}.

v: Salamouni {10350}.

 

REFERENCES

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