Program blastn blastp blastx tblastn tblastx Database >>> Miscellaneous Collections Brachypodium assembly 08/07 (nt) Brachypodium Assembly Repetitive 10/07 (nt) cv Butte86 monococcum cv NorStar cv Scout66 <<< >>> Other Genome Projects Sorghum sbi1 Triticeae collection wEST 10-2002 (nt) Repeats Pool (nt) Repeats Pool NR (nt) Mapped ESTs in Wheat 11-2002 (nt) Mapped Contigs in Wheat 11-2002 (nt) RiceGAAS 3-10-2006 (nt) Arabidopsis 10-15-2002 (nt) Arabidopsis 10-15-2002 (aa) endosperm NEW (in development) (nt) endosperm (wheat : cv. Cheyenne) (nt) wEST Peptide Pool (aa) NCBI Triticeae collection (nt) Switchgrass ESTs (nt) Brachypodium seed ESTs (nt) 07/2005 Brachypodium seed peptides (aa) 07/2005 Brachypodium library pools (nt) 09/02/2005 Brachypodium library pools CONTIGS (nt) 09/02/2005 <<< >>> NCBI ESTs by Genus/Species NCBI_Triticum_062008 NCBI_Triticum-Aegilops_ESTs_030716 NCBI_Aegilops_ESTs_030716 NCBI_Hordeum_ESTs_030716 NCBI_Secale_ESTs_030724 <<< >>> Contig Collections Triticeae NSF Contig collection 04-01-2002 NSFT02P3 (nt) Wheat Winnipeg Contig collection 10-28-2002 DSW02C4 (nt) Wheat Winnipeg Contig collection 06-20-2002 DSW01C4 (nt) SCRI Barley Contig collection 04-09-2002 SCRI01C1 (nt) Triticeae NSF Contig collection 01-31-2001 NSFT01P2 (nt) <<< >>> Triticeae NSF ESTs by Library AS F2X anther premeiotic AS040E1X (nt) SC Blanco young root tips Al SC010XXX (nt) SC Blanco young root tips ctrl SC013XXX (nt) SC Blanco mature anthers SC024E1X (nt) TA Cheyenne endosperm 5-30-DPA TA001E1X (nt) TA CS whole seedling dehydrated TA005E1X (nt) TA CS whole seedling dehydrated TA005E2S (nt) TA CS shoot seedling etiolated TA006E1X (nt) TA CS shoot seedling etiolated TA006E2N (nt) TA CS whole seedling cold TA007E1X (nt) TA CS root seedling etiolated TA008E1X (nt) TA CS root seedling etiolated TA008E3N (nt) TA Sumai mature spike Fusarium TA009XXX (nt) TA Brevor mature embryo ABA TA012XXX (nt) TA CS whole 14dy seedlg heat2hr TA015E1X (nt) TA CS crown seedling vernalized TA016E1X (nt) TA CS spike 20-45 DPA TA017E1X (nt) TA CS spike 5-15 DPA TA018E1X (nt) TA CS spike pre-anthesis whtylw TA019E1X (nt) TA TAMW101 leaf drought stress TA027E1X (nt) TA CS flagleaf at anthesis heat TA031E1X (nt) TA CS spike 5-20 DAP TA032E1X (nt) TA CS leaf full tiller drought TA036E1X (nt) TA CS sheath seedling salt TA037E1X (nt) TA CS crown seedling salt TA038E1X (nt) TA CS seed 3-6 DAP TA042E1X (nt) TM DV92 shoot apex 5-wk induced TM011E1X (nt) TM DV92 shoot apex 5-wk non-ind TM043EXX (nt) TT Langdon-16 whole mature TT039E1X (nt) <<< >>> Triticeae ITEC ESTs ITEC_Triticeae (all species) (nt) ITEC_Hordeum (barley) (nt) ITEC_Triticum (wheat) (nt) <<< >>> Triticeae ESTs by Cultivar {SpeciesCode}_{Cultivar}_{YYMMDD} As_F2s_from_2-12-4-8-1-1-1-_1__x_PI36909-12-811-_1__031007 Hv_Barke_031007 Hv_Forester_031007 Hv_Nure_031007 Sc_Blanco_031007 Ta_93FHB37_050401 Ta_94M370_031007 Ta_Atlas_062008 Ta_BH1146_050401 Ta_Brevor_062008 Ta_Butte_86_050401 Ta_Catoctin_031007 Ta_Cheyenne_062008 Ta_ChineseSpring_062008 Chinese_Spring Ogihara Chinese_Spring Anderson Ta_CI14106_062008 Ta_Chinese_Spring_Doubled_Haploid_line_DV418_031007 Ta_Coker797_Hamlet_050401 Ta_Darius_031007 Ta_FHB148_050401 Ta_Florida_062008 Ta_Franka_031007 Ta_Frontana_050401 Ta_Glenlea_062008 Ta_Hartog_062008 Ta_Harus_050401 Ta_Hi_Line_031007 Ta_Jingdong_No_1_031007 Ta_Mercia_062008 Ta_Mustang_062008 Ta_NongDa3338_050401 Ta_Norin26_062008 Ta_Norstar_031007 Ta_Novo67_062008 Ta_Odeon_031007 Ta_PI78383_062008 Ta_PI137739_031007 Ta_PI294994_031007 Ta_Polk_031007 Ta_Recital_062008 Ta_Riband_031007 Ta_Sinvalocho-MA_031007 Ta_Soliel_031007 Ta_springwheat_050401 Ta_Stephens_062008 Ta_Sumai3_062008 Ta_TAI-27_031007 Ta_TAM_W101_050401 Ta_Thatcher_062008 Ta_Tugela_DN_031007 Ta_Wyuna_062008 Ta_Yanda_1817_031007 Ta_hardredspring_050401 Ta_powdery_mildew_resistant_031007 Ta_monococcum_050401 Tm_DV92_062008 Tm_G3116_062008 Tt_Langdon-16_050401 Tt_Siliana_031007 <<<
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
