September 2020: Progress on the Oat Mapathon

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Oat Mapathon 2020

In collaboration with Agriculture and Agri-Food Canada (AAFC), oat maps identified as important legacy maps are adding to the GrainGenes collection of genetic maps. Links to MapData records, Reference records, and brief descriptions of the map sets are listed below in publication order. All maps below are available for comparative mapping using the CMap tool. Click on the map link in the map data record to be taken to CMap.

We are still working though these and more are in the queue. Watch GrainGenes Updates for announcements of individual map sets!

Many thanks to Charlene Wight and Nick Tinker for pre-curating these data for GrainGenes.

Loaded October 2019 - September 2020
Oat-2015-Spanish_Pc_Pm 5 crown rust GWAS QTL and 1 seedling / 3 adult powdery mildew GWAS QTL, on Spanish cultivars and landraces. Montilla-Bascon et al. (2015) Genome-wide association study for crown rust (Puccinia coronata f. sp. avenae) and powdery mildew (Blumeria graminis f. sp. avenae) resistance in an oat (Avena sativa) collection of commercial varieties and landraces. Front. Pl. Sci. 6:103

Oat-2012-Dal_x_Exeter 50 Fatty acid and agronomic QTL mapped with DArT markers on Dal x Exeter. Hizbai et al. (2012) Quantitative trait loci affecting oil content, oil composition, and other agronomically important traits in oat. Plant Genome 5:164

Oat-2010-MAMA SSR marker development in 3 populations. Wight et al. (2010) A set of new simple sequence repeat and avenin DNA markers suitable for mapping and fingerprinting studies in oat (Avena spp.). Crop Sci. 50:1207

Oat-2010-MxN_PcQTL 8 crown rust and 3 heading date QTL on MN841801-1 x Noble-2. Acevedo et al. (2010) Identification and validation of quantitative trait loci for partial resistance to crown rust in oat. Phytopathology 100:511

Oat-2010-SolxHi Pc91 mapped with DArTs from CDC Sol-Fi x HiFi. McCartney et al. (2011) Mapping of the oat crown rust resistance gene Pc91. TAG 122:317

Loaded September - October 2019
Oat-2019-CrownRust Pc45 and PcKM mapped in 5 populations with KASP markers. Kebede et al. (2019) Mapping Oat Crown Rust Resistance Gene Pc45 Confirms Association with PcKM. G3: Genes, Genomes, Genetics 9:505

Oat-2015-CrownRust Morton x OT3019, Weaver x Kame, OT9001 x OT3060 Gnanesh et al. (2015) Genetic analysis and molecular mapping of a seedling crown rust resistance gene in oat. TAG 128:247.

Oat-2014-CrownRust Assiniboia, Makuru and MN841801 x Medallion maps. Lin et al. (2014) A major quantitative trait locus conferring adult plant partial resistance to crown rust in oat. BMC Plant Biology 14:250

Oat-2006-OxT_Pc58 Pc58 genes on Ogle x TAM O-301 Hoffman et al. (2006) Characterization and Mapping of a Crown Rust Resistance Gene Complex (Pc58) in TAM O-301. Crop Sci 46:2630

Oat-1996-KxO Crown rust resistance QTL on Kanota x Ogle Bush and Wise (1996) Crown rust resistance loci on linkage groups 4 and 13 in cultivated oat. J Heredity 87:427

Oat-1995-Mak2x1588 Pc95 and Pg3 on Makura x WI X1588-2 Harder et al. (1995) Stem and Crown Rust Resistance in the Wisconsin Oat Selection X1588-2. Crop Sci 35:1011

Oat-1983-Pc_Floret. Four populations from Wong et al. (1983) The inheritance of resistance to Puccinia coronata and of floret characters in Avena sterilis. Can J Gen Cyt 25:329

Oat-1980-Pc62xPc38, Oat-1980-Pc63xPc38, and Oat-1980-Pc62xPc53. Harder et al., (1980) Inheritance of crown rust resistance in three accessions of Avena sterilis. Can J. Gen Cyt 22:27

Oat-1962-4023x7098 Pg-2 and Pg-8 mapped onto CI 4023 x CI7098, and Oat-1962-WRxE Pg-1 and Pg-2 mapped on Exeter x White Russian McKenzie and Green (1962) Further studies on the genes in oats for resistance in stem rust. Can J. Gen Cyt 4:394

Loaded earlier in 2019

Oat-2017-U01BxU006: 738 loci on 52 linkage groups in UFRGS 01B7114-1-3 x UFRGS 00603-1; Oat-2017-UTauxU017: 543 loci on 49 linkage groups in URS Taura x UFRGS 017004-2 Ubert IP et al. (2017) Genetics and molecular mapping of the naked grains in hexaploid oat. Euphytica 213:41

Oat-2009-KxO: 2401 loci on 34 linkage groups in Kanota x Ogle. Tinker NA et al. (2009) New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Genomics 10:39

Oat-2007-AsbxS42: Pc94 linked to a SNP on Assiniboia x S42; Oat-2007-CalxS42: on Calibre x S42. Chen G et al. (2007) Discovery and genotyping of high-throughput SNP markers for crown rust resistance gene Pc94 in cultivated oat. Pl Breed 126:379

Oat-2006-FxW: Winterhardiness QTL on Fulghum x Wintok. Santos AG et al. (2006) A cytological marker associated with winterhardiness in oat. Crop Sci 46:203

Oat-2006-Am27xN Eg-5 mapped to 4 loci in Am27 x Neklan; Oat-2006-Am28xF Eg-5 maped to 6 loci in Am28 x Flamingsprofi. Yu and Herrmann (2006) Inheritance and mapping of a powdery mildew resistance gene introgressed from Avena macrostachya in cultivated oat. TAG 113:429

Oat-2006-U8xP 3 Flowering time QTL on UFRGS 8 x Pc68/5*Starter; Oat-2006-U8xU605 1 flowering time QTL in UFRGS 8 x UFRGS 930605; Oat-2006-U71xP 1 flowering time QTL in UFRGS 881971 x Pc68/5*Starter. Locatelli AB et al. (2006) Loci affecting flowering time in oat under short-day conditions. Genome 49:1528

Oat-2006-AxK Dw6 mapped to 2 loci in Aslak x Kontant. Tanhuanp P et al. (2006) Generation of SNP markers for short straw in oat (Avena sativa L.). Genome 49:282

Oat-2006-LAG211 : 4 Aluminum tolerance QTL from an Avena strigosa population from CIav 2921 x CIav 9011. Wight et al. (2006) Identification of molecular markers for aluminium tolerance in diploid oat through comparative mapping and QTL analysis. TAG 112:222.

Oat-2004-OT328xDumont 20 loci on 4 maps including 4 Pc and Pg genes on OT328 x Dumont. Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.). Mol Br 14:349

Oat-2004-CalxS42 Pc94 linked to SCAR markers in Calire x S42; Oat-2004-MS68xS42and in S42 x Pc68. Chong J et al. (2004) Development of sequence-characterized amplified region (SCAR) markers for resistance gene Pc94 to crown rust in oat. Can J Plant Path 26:89

Oat-2004-TxM : 48 QTL, 430 loci on 34 linkage groups from a Terra x Marion (Canada) population. De Koeyer DL et al. (2004) A molecular linkage map with associated QTLs from a hulless x covered spring oat population. TAG 108:1285.

Oat-2002-KxO 81 loci on Kanota x Ogle. Cheng DW et al. (2002) Genetic and physical mapping of Lrk10-like receptor kinase sequences in hexaploid oat (Avena sativa L.). Genome 45:100

Oat-2001-KxM : 148 AFLP and RFLP markers including two markers for the Accase (Avena) gene on 24 linkage groups from a Kanota by Marion (Canada) population. Groh S et al. (2001) Comparative AFLP mapping in two hexaploid oat populations. TAG 102:876.

Oat-2000-KxO-Bgl: 7 beta-glucan QTL and associated markers in a Kanota x Ogle population. Kianian SF et al. (2000) Quantitative trait loci influencing beta-glucan content in oat (Avena sativa, 2n=6x=42). TAG 101:1039

Oat-2000-KxM-Bgl: 4 beta-glucan QTL and associated markers in a Kanota x Marion (Canada) population. The actual KxM map is not presented in the paper, just a small number of associations. Kianian SF et al. (2000) Quantitative trait loci influencing beta-glucan content in oat (Avena sativa, 2n=6x=42). TAG 101:1039

Oat-1999-KxO-Oil: 4 groat oil QTL on a a Kanota x Ogle population. Kianan SF et al. (1999) Association of a major groat oil content QTL and an acetyl-CoA carboxylase gene in oat. TAG 98:884

Oat-1999-KxM-Oil: 4 groat oil QTL on a a Kanota x Marion (Canada) population. Kianan SF et al. (1999) Association of a major groat oil content QTL and an acetyl-CoA carboxylase gene in oat. TAG 98:884

OAT-1999-2630X1994 Bgl1 linkage to EstS in A.strigosa x A.westii. Oat-1999-2630x3815 Bgl1, EstS, Gh, Lsp on A.strigosa; Oat-1999-3815-1994 EstS, Gh, Lsp on A.strigosa x A.westii Hoffman DL (1999) Inheritance and Linkage Relationships of Morphological and Isozyme Loci in As-genome Diploid Oat (Avena spp.). J Her 90:446

Oat-1997-207xK Dw6 linked to molecular markers on OT207 x Kanota; Oat-1997-AV17xK on Av17/3/10 x Kanota; and Oat-1997-AV18xK on AV18/2/4 x Kanota. Milach SCK et al. (19 97) Molecular genetic mapping of dwarfing genes in oat. TAG 95:783

Oat-1997-CxACM 3 kernel percent hull QTL on Cascade x AC Marie. Ronald PS et al. (1997) Identification of RAPD markers for percent hull in oat. Genome 40:873

Oat-1997-NCxK Dw7 on NC2469-3 x Kanota. Milach SCK et al. (1997) Molecular genetic mapping of dwarfing genes in oat. TAG 95:783

Oat-1996-OT328xDumont 16 loci including pg-13, pg-9 and Avn-B2 on OT328 x Dumont. O'Donoughue LS el al. (1996) Localization of stem rust resistance genes and associated molecular markers in cultivated oat. Phytopathology 86:719

Oat-1996-ROxpg9 7 loci linked including pg9(PcX) on Rodney O x Rodney O-pg9. O'Donoughue LS el al. (1996) Localization of stem rust resistance genes and associated molecular markers in cultivated oat. Phytopathology 86:719

Oat-1996-Pc35xPc96 Pc-35 linked to Pc-96 on Pc35 x Pc96. Chong and Brown (1996) Genetics of resistance to Puccinia coronata f.sp. avenae in two Avena sativa accessions. Can J Pl Path 18:286

Oat-1994-AmagxO: Pc91 gene linkage with umn145 in Amagalon x Ogle. Rooney et al. (1994) Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat. Crop Sci. 34:940.

Oat-1994-AmagxS Pc91 gene linkage with umn145 in Amagalon x Starter-1. Rooney et al. (1994) Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat. Crop Sci. 34:940.

Oat-1994-No59xPc68 Pc-68 linked to pg-9 on No.59 x Pc68. Chong J et al. (1994) Identification of the stem rust resistance gene Pg9 and its association with crown rust resistance and endosperm proteins in 'Dumont' oat. Genome 37:440

Oat-1994-OMxO Pc-92 linked to OG176 on Obee/Midsouth x Ogle-1. Rooney WL et al. (1994) Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat. Crop Sci 34:940

Oat-1994-OMxS Pc-92 linked to OG176 on Obee/Midsouth x Starter-1. Rooney WL et al. (1994) Identification of RFLP markers linked to crown rust resistance genes Pc91 and Pc92 in oat. Crop Sci 34:940

Oat-1994-PrxOADi-1 linked to RAPDs on OA906-1-16 x Premier. Wight and Penner The identification of random amplified polymorphic DNA markers for daylength insensitivity in oat. Genome 37:910

Oat-1993-ROxPc68 Pc68 linked to UBC269 in Rodney O x Pc68. Penner GAet al. (1993) Identification of an RAPD marker for the crown rust resistance gene Pc68 in oats. Genome 36:818

Oat-1993-ROxPg3 Pg-3 linked to ACOpR-2 in Rodney O x Rodney Pg-3. Penner GA et al. (1993) Identification of a RAPD marker linked to the oat stem rust gene Pg3. TAG 85:702

Oat-1992-ROxpg13 pg-13 linked to a 56.6 k-Da protein in Rodney O x Rodney pg13. Howes K et al.(1992) Oat endosperm proteins associated with resistance to stem rust of oats. Genome 35:120

Oat-1980-Pc54xPc35: Pc-35 and Pc-54 linkage on Pc35 x Pc54. Martens JW et al.(1980) Resistance to Puccinia graminis avenae and P. coronata avenae in the wild and cultivated Avena populations of Iran, Iraq and Turkey. Can J Gen Cyt 22:641

Oat-1976-Pc39xPc55: Pc-39 and Pc-55 linkage on Pc39 x Pc55. Kiehn FA et al. (1976) Inheritance of resistance to Puccinia coronata avenae and its association with seed characteristics in four accessions of Avena sterilis. Can J Gen Cyt 18:717

Oat-1976-Pen2x1358 awnedness linked to grey lemma on Pendek x CAV 1358; Oat-1976-Pen2x1376 on Pendek x CAV 1376; and Oat-1976-Pen2x4963 on Pendek x CAV4963. Kiehn FA et al. (1976) Inheritance of resistance to Puccinia coronata avenae and its association with seed characteristics in four accessions of Avena sterilis. Can J Gen Cyt 18:717

Oat-1971-Pc46xPc50: Pc-46 and Pc-50 linkage on Pc46 x Pc50. Fleishmann Get al. (1971) Inheritance of crown rust resistance genes in Avena sterilis collections from Israel, Portugal, and Tunisia. Can J Gen Cyt 13:251

Oat-1968-KytoxPg9: Pc-44 and pg-9 linkage on Kyto x Rodney H. Martens JW et al. (1968) Inheritance of resistance to stem and crown rust in Kyto oats. Can J Gen Cyt 10:808

Oat-1965-HxE set. 6 mapdata sets are linked to the original publication on stem rust resistance in oats using Jostrain as a common parent. McKenzie and Green (1965) Stem rust resistance in oats. I. The inheritance of resistance to race 6AF in six varieties of oats. Can J Gen Cyt 7:268.