ESTs & Bioinformatics
GrainGenes (Matthews):
- Create Excel templates for data submission.
- mapped sequences and sequenced RFLP probes
- SSRs (Include images of polymorphism surveys.)
- SNPs
- Solicit EST annotations via "Submit/comment correction". (Do some to point
to as examples.)
- (with Daryl Somers) Survey the existing EST programs for "What kind of
annotation are you doing? How? What kind of annotation would you like to
see from other programs? How should it be summarized/organized?" Report
at PAG-X.
Powell:
- Contact Ernie Retzel re clustering of Dupont ESTs with public ones.
Marshall:
- Contact EBI about serving ITMI tracefiles.
GrainGenes/SCRI:
- Website for LargeInsert projects
- Information about BAC libraries (Graner's summary, Dubcovsky's
http://wheat.pw.usda.gov/ggpages/bac_site.html)
- BAC addresses of ESTs in GrainGenes Database
- D-genome physical map project
- FASTA file of repeat-sequences (Dupont? Keller? Dubcovsky?
for barley, D.Marshall)
