GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'IWA8213' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 326 records

Query	Map	Locus	Position	Distance
IWA8213	Wheat_2014_90KSNP_1D	IWB68908	158.264	5.6
IWA8213	Wheat_2014_90KSNP_1D	IWB60158	158.699	5.2
IWA8213	Wheat_2014_90KSNP_1D	IWB59940	159.377	4.5
IWA8213	Wheat_2014_90KSNP_1D	IWB68093.2	159.508	4.3
IWA8213	Wheat_2014_90KSNP_1D	IWB15653	159.576	4.3
IWA8213	Wheat_2014_90KSNP_1D	IWB17607	159.576	4.3
IWA8213	Wheat_2014_90KSNP_1D	IWB54456	160.851	3
IWA8213	Wheat_2014_90KSNP_1D	IWB53956	160.851	3
IWA8213	Wheat_2014_90KSNP_1D	IWB55509	161.392	2.5
IWA8213	Wheat_2014_90KSNP_1D	IWB68054	161.94	1.9
IWA8213	Wheat_2014_90KSNP_1D	IWB59939	162.182	1.7
IWA8213	Wheat_2014_90KSNP_1D	IWB15565	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB15588	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB23045	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB35900	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB40950	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB47464	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB58753	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB65919	162.269	1.6
IWA8213	Wheat_2014_90KSNP_1D	IWB8874	163.855	0
IWA8213	Wheat_2014_90KSNP_1D	IWB1147	163.855	0
IWA8213	Wheat_2014_90KSNP_1D	IWB57623	163.855	0
IWA8213	Wheat_2014_90KSNP_1D	IWB65962	163.855	0
IWA8213	Wheat_2014_90KSNP_1D	IWB63464	163.855	0
IWA8213	Wheat_2014_90KSNP_1D	IWB1242	163.855	0

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.