GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'IWB35920' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 111 records

Query	Map	Locus	Position	Distance
IWB35920	Wheat_2014_90KSNP_4B	IWB13072	25.6769	9.9
IWB35920	Wheat_2014_90KSNP_4B	IWB58188	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB73760	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB70790	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB27569	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB3541	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB48970	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB55304	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB34788	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB71988	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB50854.2	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB12274	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWA2229	25.999	9.6
IWB35920	Wheat_2014_90KSNP_4B	IWB46841	26.2698	9.3
IWB35920	Wheat_2014_90KSNP_4B	IWB47977	27.3871	8.2
IWB35920	Wheat_2014_90KSNP_4B	IWB6977	27.3871	8.2
IWB35920	Wheat_2014_90KSNP_4B	IWA3239	27.3871	8.2
IWB35920	Wheat_2014_90KSNP_4B	IWA506	27.3871	8.2
IWB35920	Wheat_2014_90KSNP_4B	IWB10339	27.7606	7.8
IWB35920	Wheat_2014_90KSNP_4B	IWB73905	28.5592	7
IWB35920	Wheat_2014_90KSNP_4B	IWB43298	29.8787	5.7
IWB35920	Wheat_2014_90KSNP_4B	IWB55598	29.8787	5.7
IWB35920	Wheat_2014_90KSNP_4B	IWB68811	29.8787	5.7
IWB35920	Wheat_2014_90KSNP_4B	IWB68828.1	29.8787	5.7
IWB35920	Wheat_2014_90KSNP_4B	IWA1768	29.8787	5.7

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.