GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'IWB35997' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 105 records

Query	Map	Locus	Position	Distance
IWB35997	Durum Wheat, NSGC Sr 5A	IWB35997	213.8	0
IWB35997	Wheat_2014_90KSNP_5A	IWB48690	131.92	9.8
IWB35997	Wheat_2014_90KSNP_5A	IWA7880	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB38165	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB14882	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB14881	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB14077	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB13312	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB12333	137.884	3.9
IWB35997	Wheat_2014_90KSNP_5A	IWB9855	137.976	3.8
IWB35997	Wheat_2014_90KSNP_5A	IWB9620	137.976	3.8
IWB35997	Wheat_2014_90KSNP_5A	IWB7449	137.976	3.8
IWB35997	Wheat_2014_90KSNP_5A	IWB24592	137.976	3.8
IWB35997	Wheat_2014_90KSNP_5A	IWA6988	138.735	3
IWB35997	Wheat_2014_90KSNP_5A	IWB60611	139.512	2.2
IWB35997	Wheat_2014_90KSNP_5A	IWB74923	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB74922	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB6716	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB65661	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB59605	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB48392	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB26751	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB24813	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWB24570	139.753	2
IWB35997	Wheat_2014_90KSNP_5A	IWA7509	139.753	2

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.