GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 'opt-17610' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 28 records

Query	Map	Locus	Position	Distance
opt-17610	Oat-2009-KxO_24_26_34	re1m6_10n	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-18117	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-2747	0	0
opt-17610	Oat-2009-KxO_24_26_34	re5m7_5x	0	0
opt-17610	Oat-2009-KxO_24_26_34	UMN41	0	0
opt-17610	Oat-2009-KxO_24_26_34	UMN6003B	0	0
opt-17610	Oat-2009-KxO_24_26_34	Wacgcac261	0	0
opt-17610	Oat-2009-KxO_24_26_34	WG110A	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-10033	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-10980	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-13556	0	0
opt-17610	Oat-2009-KxO_24_26_34	UMN5245_3	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-14769	0	0
opt-17610	Oat-2009-KxO_24_26_34	BCD1555	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-15247_rp	0	0
opt-17610	Oat-2009-KxO_24_26_34	AB02.410	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-15408	0	0
opt-17610	Oat-2009-KxO_24_26_34	ACO118A	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-15673	0	0
opt-17610	Oat-2009-KxO_24_26_34	estD	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-15673_c	0	0
opt-17610	Oat-2009-KxO_24_26_34	ISU1463	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-17610	0	0
opt-17610	Oat-2009-KxO_24_26_34	ISU1874A	0	0
opt-17610	Oat-2009-KxO_24_26_34	opt-17610_c	0	0

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.