GrainGenes

GrainGenes SQL Interface

This page allows you to perform raw SQL queries directly. This is the ultimate power query. We don't know of any other Web-accessible databases that open this privilege to their users. It entails some risk but we're confident that it's minimal because we know our users are responsible. But, we hope, not timid. We want this interface to be used. Please click here for full information on how to use it.

Premade Queries:
SQL query:	-- Loci near a specified locus, on any map select distinct locus_1.name as Query, map.name as Map, locus_2.name as Locus, p2.begin as Position, ROUND(ABS(p2.begin-p1.begin),1) as Distance from locus locus_1 inner join maplocus p1 on locus_1.id = p1.locusid and p1.begin is not null and locus_1.name like 're5m7\_14x' inner join map on p1.mapid = map.id -- Include only those maps that use cM units. inner join mapdataremark on map.mapdataid = mapdataremark.mapdataid and mapdataremark.type = 'Map_units' and mapdataremark.remark like '%cM%' -- First get the nearby loci on this map: left join maplocus p2 on p1.mapid = p2.mapid and ( ABS(p2.begin - p1.begin) < 10 ) -- Then get the names of these nearby loci: left join locus locus_2 on p2.locusid = locus_2.id where -- Don't list locus_1 if there are no neighbors: locus_2.name is not null order by locus_1.name, map.name, p2.begin
	Schema: Diagrams \| Table definitions

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Showing records 1 through 25 of 50 records

Query	Map	Locus	Position	Distance
re5m7_14x	Oat-2009-KxO_4_12_13	UMN853	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-16128_c	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	UMN869	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	BCD1482B	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-14336	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	CDO1473B	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-15025	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	CDO1385F	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-16128	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	avnA	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-16923	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	e8m1_6	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-1755	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	POP6ADIRI	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-18225	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	re5m7_14x	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-4915	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	re6m4_3a	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-4915_c	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	UMN101	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-6235	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	UMN194A	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	opt-6798	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	UMN214A	127	0
re5m7_14x	Oat-2009-KxO_4_12_13	ALrk1A1_C	127	0

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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.