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GrainGenes Journal Report: Functional and Integrative Genomics

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Journal
Functional and Integrative Genomics
Source Code
FIG
ISSN Number
1438-793X
URL
https://link.springer.com/journal/10142
Paper
[ Hide all but 1 of 83 ]
ReferenceBeyer S et al. (2019) Loci and candidate genes controlling root traits in wheat seedlings - a wheat root GWAS Functional and Integrative Genomics 19:91-107.
ReferenceAlvarez MA et al. (2016) Genetic and physical mapping of the earliness per se locus Eps-A(m)1 in Triticum monococcum identifies EARLY FLOWERING 3 (ELF3) as a candidate gene. Functional and Integrative Genomics 16:365-382.
ReferenceHong Y et al. (2014) Transcript suppression of TaGW2 increased grain width and weight in bread wheat. Functional and Integrative Genomics 14:341-9.
ReferenceGadaleta A et al. (2011) The glutamine synthetase (GS2) genes in relation to grain protein content of durum wheat. Functional and Integrative Genomics 11:665-670.
ReferenceJiang QY et al. (2010) Wheat (T. aestivum) sucrose synthase 2 gene (TaSus2) active in endosperm development is associated with yield traits. Functional and Integrative Genomics 11:49-61.
ReferenceShaw LM et al. (2009) Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation. Functional and Integrative Genomics 9:485-498.
ReferenceErgen NZ et al. (2009) Transcriptome pathways unique to dehydration tolerant relatives of modern wheat. Functional and Integrative Genomics 9:377-396.
ReferenceBovill WD et al. (2009) Whole genome approaches to identify early meiotic gene candidates in cereals. Functional and Integrative Genomics 9:219-229.
ReferenceWei B et al. (2009) Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv. Functional and Integrative Genomics 9:499-511.
ReferenceQuraishi UM et al. (2009) Genomics in cereals: from genome-wide conserved orthologous set (COS) sequences to candidate genes for trait dissection. Functional and Integrative Genomics 9:473-484.
ReferenceMuoz-Amatrian M et al. (2009) Microspore embryogenesis: assignment of genes to embryo formation and green vs. albino plant production. Functional and Integrative Genomics 9:311-323.
ReferenceHowitt CA et al. (2009) Alternative splicing, activation of cryptic exons and amino acid substitutions in carotenoid biosynthetic genes are associated with lutein accumulation in wheat endosperm. Functional and Integrative Genomics 9:363-376.
ReferenceChen A et al. (2009) Flt-2L, a locus in barley controlling flowering time, spike density, and plant height. Functional and Integrative Genomics 9:243-254.
ReferenceGennaro A et al. (2009) A candidate for Lr19, an exotic gene conditioning leaf rust resistance in wheat. Functional and Integrative Genomics 9:325-334.
ReferenceAnderson OD et al. (2009) The wheat omega-gliadin genes: structure and EST analysis. Functional and Integrative Genomics 9:397-410.
ReferenceSkinner DZ (2009) Post-acclimation transcriptome adjustment is a major factor in freezing tolerance of winter wheat. Functional and Integrative Genomics 9:513-523.
ReferenceJia Q et al. (2009) GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley. Functional and Integrative Genomics 9:255-262.
ReferenceZhang L et al. (2008) Parallel expression profiling of barley-stem rust interactions. Functional and Integrative Genomics 8:187-198.
ReferenceKawaura K et al. (2008) Genome-wide analysis for identification of salt-responsive genes in common wheat. Functional and Integrative Genomics 8:277-286.
ReferenceTommasini L et al. (2008) Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of Barley (Hordeum vulgare L.). Functional and Integrative Genomics 8:387-405.
ReferenceKota R et al. (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Functional and Integrative Genomics 8:223-233.
ReferenceHuo N et al. (2008) The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Functional and Integrative Genomics 8:135.
ReferenceKaur P et al. (2008) Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates. Functional and Integrative Genomics 8:375-386.
ReferenceKuraparthy V et al. (2008) Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice. Functional and Integrative Genomics 8:33.
ReferencePaux E et al. (2008) Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis. Functional and Integrative Genomics 8:29.
ReferenceFaris JD et al. (2008) Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Functional and Integrative Genomics 8:149.
ReferenceWalter S et al. (2008) Components of the gene network associated with genotype-dependent response of wheat to the Fusarium mycotoxin deoxynivalenol. Functional and Integrative Genomics 8:421-427.
ReferenceForrest KL and Bhave M (2008) The PIP and TIP aquaporins in wheat form a large and diverse family with unique gene structures and functionally important features. Functional and Integrative Genomics 8:115.
ReferenceRoeder MS et al. (2008) Fine mapping of the region on wheat chromosome 7D controlling grain weight. Functional and Integrative Genomics 8:79.
ReferenceClarke B et al. (2008) Gene expression in a starch synthase IIa mutant of barley: changes in the level of gene transcription and grain composition. Functional and Integrative Genomics 8:211-221.
ReferenceHu P and Wise RP (2008) Diversification of Lrk/Tak kinase gene clusters is associated with subfunctionalization and cultivar-specific transcript accumulation in barley. Functional and Integrative Genomics 8:199-209.
ReferencePerovic D et al. (2007) An integrated approach for the comparative analysis of a multigene family: the nicotianamine synthase genes of barley. Functional and Integrative Genomics 7:169.
ReferencePoole R et al. (2007) Measuring global gene expression in polyploidy; a cautionary note from allohexaploid wheat. Functional and Integrative Genomics 7:207.
ReferenceBernardo A et al. (2007) Fusarium graminearum-induced changes in gene expression between Fusarium head blight-resistant and susceptible wheat cultivars. Functional and Integrative Genomics 7:69.
ReferenceBaga M et al. (2007) Identification of quantitative trait loci and associated candidate genes for low-temperature tolerance in cold-hardy winter wheat. Functional and Integrative Genomics 7:53.
ReferenceSingh NK et al. (2007) Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes. Functional and Integrative Genomics 7:17.
ReferenceWhitford R et al. (2007) Identification of transposons, retroelements, and a gene family predominantly expressed in floral tissues in chromosome 3DS of the hexaploid wheat progenitor Aegilops tauschii. Functional and Integrative Genomics 7:37-52.
ReferencePotokina E et al. (2006) Expression genetics and haplotype analysis reveal cis regulation of serine carboxypeptidase I (Cxp1), a candidate gene for malting quality in barley (Hordeum vulgare L.). Functional and Integrative Genomics 6:25.
ReferenceKawaura K et al. (2006) Transcriptome analysis of salinity stress responses in common wheat using a 22k oligo-DNA microarray. Functional and Integrative Genomics 6:132.
ReferenceLi W and Gill BS (2006) Multiple genetic pathways for seed shattering in the grasses. Functional and Integrative Genomics 6:300-309.
ReferenceDruka A et al. (2006) An atlas of gene expression from seed to seed through barley development. Functional and Integrative Genomics 6:202.
ReferenceRavel C et al. (2006) Single nucleotide polymorphism, genetic mapping, and expression of genes coding for the DOF wheat prolamin-box binding factor. Functional and Integrative Genomics 6:310.
ReferenceMateos-Hernandez M et al. (2006) Targeted mapping of ESTs linked to the adult plant resistance gene Lr46 in wheat using synteny with rice. Functional and Integrative Genomics 6:122.
ReferenceLiu S et al. (2006) Complex microcolinearity among wheat, rice, and barley revealed by fine mapping of the genomic region harboring a major QTL for resistance to Fusarium head blight in wheat. Functional and Integrative Genomics 6:83.
ReferenceWalia H et al. (2006) Expression analysis of barley (Hordeum vulgare L.) during salinity stress. Functional and Integrative Genomics 6:143.
ReferenceLu H and Faris JD (2006) Macro- and microcolinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome. Functional and Integrative Genomics 6:90.
ReferenceJohnson JC et al. (2006) The PDI genes of wheat and their syntenic relationship to the esp2 locus of rice. Functional and Integrative Genomics 6:104.
ReferenceSalina EA et al. (2006) Wheat genome structure: translocations during the course of polyploidization. Functional and Integrative Genomics 6:71.
ReferenceIbrahim AFM et al. (2005) A comparative analysis of transcript abundance using SAGE and Affymetrix arrays. Functional and Integrative Genomics 5:163-174.
ReferenceWatson L and Henry RJ (2005) Microarray analysis of gene expression in germinating barley embryos (Hordeum vulgare L.). Functional and Integrative Genomics 5:155-162.
ReferenceWilson ID et al. (2005) Alteration of the embryo transcriptome of hexaploid winter wheat (Triticum aestivum cv. Mercia) during maturation and germination. Functional and Integrative Genomics 5:144-154.
ReferenceKulwal P et al. (2005) Gene networks in hexaploid wheat: interacting quantitative trait loci for grain protein content. Functional and Integrative Genomics 5:254.
ReferenceGoyal A et al. (2005) Physical molecular maps of wheat chromosomes. Functional and Integrative Genomics 5:260.
ReferenceRaman R et al. (2005) Genetic and in silico comparative mapping of the polyphenol oxidase gene in bread wheat (Triticum aestivum L.). Functional and Integrative Genomics 5:185.
ReferenceSkinner DZ et al. (2005) Long oligonucleotide microarrays in wheat: evaluation of hybridization signal amplification and an oligonucleotide-design computer script. Functional and Integrative Genomics 5:70-79.
ReferencePeng JH and Lapitan NLV (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Functional and Integrative Genomics 5:80-96.
ReferenceMillar AA and Waterhouse PM (2005) Plant and animal microRNAs: similarities and differences. Functional and Integrative Genomics 5:129-135.
ReferenceFrancki M et al. (2004) Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat. Functional and Integrative Genomics 4:118-130.
ReferenceLi Z et al. (2004) Detailed comparison between the wheat chromosome group 7 short arms and the rice chromosome arms 6S and 8L with special reference to genes involved in starch biosynthesis. Functional and Integrative Genomics 4:231-240.
ReferenceFoote TN et al. (2004) Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content. Functional and Integrative Genomics 4:26-33.
ReferenceRota M and Sorrells ME (2004) Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat. Functional and Integrative Genomics 4:34-46.
ReferenceGuyot R et al. (2004) In silico comparative analysis reveals a mosaic conservation of genes within a novel colinear region in wheat chromosome 1AS and rice chromosome 5S. Functional and Integrative Genomics 4:47-58.
ReferenceBellgard M et al. (2004) The bioinformatics challenges in comparative analysis of cereal genomes: an overview. Functional and Integrative Genomics 4:1-11.
ReferenceDistelfeld A et al. (2004) Microcolinearity between a 2-cM region encompassing the grain protein content locus Gpc-6B1 on wheat chromosome 6B and a 350-kb region on rice chromosome 2. Functional and Integrative Genomics 4:59-66.
ReferenceSingh NagendraK et al. (2004) Sequence analysis of the long arm of rice chromosome 11 for rice/wheat synteny. Functional and Integrative Genomics 4:102-117.
ReferencePerovic D et al. (2004) An integrated approach for comparative mapping in rice and barley based on genomic resources reveals a large number of syntenic markers but no candidate gene for the Rph16 resistance locus. Functional and Integrative Genomics 4:74-83.
ReferenceLi C et al. (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Functional and Integrative Genomics 4:84-93.
ReferenceGupta PK and Rustgi S (2004) Molecular markers from the transcribed/expressed region of the genome in higher plants. Functional and Integrative Genomics 4:139-162.
ReferenceSourdille P et al. (2004) Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Functional and Integrative Genomics 4:12-25.
ReferenceKulwal PL et al. (2004) Genetic basis of pre-harvest sprouting tolerance using single-locus and two-locus QTL analyses in bread wheat. Functional and Integrative Genomics 4:94-101.
ReferenceBanks TW et al. (2004) In silico physical mapping software for the Triticum aestivum genome. Functional and Integrative Genomics 4:131-137.
ReferenceAnderson OD et al. (2003) The wheat D-genome HMW-glutenin locus: BAC sequencing, gene distribution, and retrotransposon clusters. Functional and Integrative Genomics 3:56-68.
ReferenceSuzuki G et al. (2003) The starch branching enzyme I locus from Aegilops tauschii, the donor of the D genome to wheat. Functional and Integrative Genomics 3:69-75.
ReferenceQi L et al. (2003) Molecular characterization of a set of wheat deletion stocks for use in chromosome bin mapping of ESTs. Functional and Integrative Genomics 3:39-55.
ReferenceLi Z et al. (2003) The structural organisation of the gene encoding class II starch synthase of wheat and barley and the evolution of the genes encoding starch synthases in plants. Functional and Integrative Genomics 3:76-85.
ReferenceSpielmeyer W and Lagudah ES (2003) Homoeologous set of NBS-LRR genes located at leaf and stripe rust resistance loci on short arms of chromosome 1 of wheat. Functional and Integrative Genomics 3:86-90.
ReferenceAppels R et al. (2003) Advances in cereal functional genomics. Functional and Integrative Genomics 3:1-24.
ReferenceAppels R (2002) A look through cereal genomics. Functional and Integrative Genomics 2:1-3.
ReferencePotokina E et al. (2002) Differential gene expression during seed germination in barley (Hordeum vulgare L.). Functional and Integrative Genomics 2:28-39.
ReferenceScherrer B et al. (2002) Two haplotypes of resistance gene analogs have been conserved during evolution at the leaf rust resistance locus Lr10 in wild and cultivated wheat. Functional and Integrative Genomics 2:40-50.
ReferenceSanMiguel PJ et al. (2002) Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5Am. Functional and Integrative Genomics 2:70-80.
ReferenceRostoks N et al. (2002) Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley. Functional and Integrative Genomics 2:51-59.
ReferenceClarke BC et al. (2000) Genes active in developing wheat endosperm. Functional and Integrative Genomics 1:44-55.

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