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GrainGenes Locus Report: BCD453B

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Locus
BCD453B  [ Marker Report ]
Type
RFLP
Synonym
SynonymBCD453
Chromosome
2H
4H
Map
Barley-consensus-2003-2H102.6
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[ Show Nearby Loci ]
Bin
4H-Bin 8
4H_08.1
4H_08.1_k8
Map Data
Barley consensus 2
[ Show all 19 ]
Species
Hordeum vulgare
Probe
BCD453
Homology
I54552e-value: 6.9hypothetical serine proteinase - rat
AF155121_1e-value: 2e-06(AF155121) apoplastic invertase [Oryza sativa subsp. indica]
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Langridge, Peter J.
Remark
Number of populations contributing to the placement of BCD453B in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
{bcd453}BCD453
[ Show all 13 ]