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GrainGenes Locus Report: BCD828

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Locus
BCD828  [ Marker Report ]
Type
RFLP
Synonym
SynonymRrs.B87 (Hordeum)
Chromosome
3A
3B
3D
3H
Chromosome Arm
3AL
3BL
3DL
3HS
Map
Barley-Consensus-3H-0.1
[ Show all 17 ]
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Bin
3H-Bin 6
3H_06.1
3H_06.1_k6
Map Data
Barley consensus
[ Show all 18 ]
Probe
BCD828
Associated Gene
Rrs.B87 (Hordeum)
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceWilliams K et al. (2001) Mapping of a gene for leaf scald resistance in barley line 'B87/14' and validation of microsatellite and RFLP markers for marker-assisted selection Plant Breeding 120:301-304.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of BCD828 in the Barley, Consensus 2006 DArT maps = 1
The BCD828 RFLP/STS is a gene marker for the Rrs.B87 (Hordeum) gene
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
{bcd828}BCD828-3H
[ Show all 9 ]