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GrainGenes Locus Report: CDO484

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Locus
CDO484  [ Marker Report ]
Type
RFLP
Synonym
SynonymCDO484
POPA3_0504
Chromosome
2D
4A
5H
7 (5H)
Chromosome Arm
2DL
5HL
Map
Barley-Consensus-5H107.2
[ Show all 16 ]
[ Show Nearby Loci ]
Bin
5H-Bin 14
5H_14.1_k14
5H_14.2
Binlocus in
5H-Bin 14
In QTL
QGms.StMo-5H.2
Map Data
Barley consensus
[ Show all 18 ]
Probe
CDO484
Homology
NP_033047.1e-value: 3.8retinoic acid induced 1 [Mus musculus]
BAA92155.1e-value: 0.50(AB007818) glycine-rich protein [Citrus unshiu]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Blake, Tom05.04.19
Kleinhofs, Andris
Remark
Number of populations contributing to the placement of CDO484 in the Barley, Consensus 2006 DArT maps = 2
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
{cdo484}CDO484B
[ Show all 11 ]