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GrainGenes Locus Report: CDO504

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
CDO504  [ Marker Report ]
Type
RFLP
Probe
CDO504
Synonym
Other namecdo504
SynonymCDO504
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-consensus-2003-5H30.4
[ Show all 27 ]
[ Show Nearby Loci ]
Bin
5H-Bin 11
5H_11.1
5H_11.1_k11
In QTL
QBgnm.HaTR-5H.1
QEv.HaTR-5H
QHt.BlE2-5H
QSss.HaTR-5H.1
Map Data
Barley consensus
[ Show all 25 ]
Species
Avena sativa
Homology
AAF71315.1e-value: 4e-32(AF241512) unknown [Agropyron cristatum]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO504 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
[ Hide all but 1 of 7 ]
{cdo504}Xcdo504
Xcdo504-5A
Xcdo504-5B
Xcdo504-5D
Xcnl.CDO504
cdo504
cdo504-5B

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