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GrainGenes Locus Report: CDO673

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Locus
CDO673  [ Marker Report ]
Type
RFLP
Synonym
Synonymnud (Hordeum)
Chromosome
1H
7H
Chromosome Arm
7HS
Map
Barley-consensus-2003-1H117.8
[ Show all 17 ]
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Bin
7H-Bin 7
7H_07.1
7H_07.2
In QTL
QPg.PrNu-5H.1
Map Data
Barley consensus
[ Show all 16 ]
Probe
CDO673
Associated Gene
nud (Hordeum)
Homology
AC012188_16e-value: 2e-23(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
D81906e-value: 2.1probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491]
AC012188_16e-value: 2e-21(AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Gene Class
Naked karyopsis
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO673 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
{cdo673}cdo673a
[ Show all 8 ]