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GrainGenes Locus Report: HVM31

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Locus
HVM31  [ Marker Report ]
Type
Microsatellite
Synonym
SynonymHVM31
Chromosome
6H
Map
Hordeum-Consensus2005-SNP-6H72.815
[ Show all 15 ]
[ Show Nearby Loci ]
Bin
6H_06.1
6H_06.1_k6
Map Data
Barley, Abiotic QTL Consensus
[ Show all 15 ]
Species
Hordeum spontaneum
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
HVM31
ReferenceLiu Z-W et al. (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93:869-876.
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLiu Z-W et al. (1996) Development of simple sequence repeat DNA markers and their integration into a barley linkage map. Theoretical and Applied Genetics 93:869-876.
Remark
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Assigned to chromosome based on wheat-barley addition line assays.
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant, Lina x H. spontaneum
Insert contains repeat (AC)9
Polymorphic Information Content (PIC) = 0.36
Developing laboratory = VPISU (MA Saghai Maroof)