Query (optional)   in Class  

GrainGenes Locus Report: Ica1

[ Printable Version ]  [ Submit comment/correction ]

Locus
Ica1  [ Marker Report ]
Type
Gene
RFLP
Synonym
SynonymIca1 (Hordeum)
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Consensus-1H0
[ Show all 20 ]
[ Show Nearby Loci ]
Bin
1H-Bin 6
1H_06.1
1H_06.1_k6
Map Data
Barley consensus
[ Show all 20 ]
Species
Hordeum vulgare
Probe
pc1 12
PCI1-2
PCI1-4
PCl1-2
Associated Gene
Ica1 (Hordeum)
Candidate Gene
Ica1 (Hordeum)
Gene Class
Inhibitor of chymotrypsin and Aspergillus protease
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Close, Timothy J.
Remark
Number of populations contributing to the placement of Ica1 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
{Ica1}Xpsr884(Ica1)-1A
Xpsr884(Ica1)-1B
Xpsr884(Ica1)-1D