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GrainGenes Locus Report: POPA1_0002

[Submit comment/correction] [What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0002  [ Marker Report ]
Type
SNP
Probe
HAR35_17380
i_11_10002
Synonym
Other name11_10002
BOPA1_10070-1435
BOPA1_11_10002
Synonym11_10002
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H61.5
Hordeum-OPA-2009-1H66.7
Hordeum-OPA123-2008-1H66.7
Hordeum-OPAConsensus-2011-1H64.44
Hordeum-OWB-OPA2008-1H76.415
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0761B06
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0002
Marker name in barley OPA1 = 11_10002
Original SNP name = 10070-1435
Most representative HarvEST:Barley Assembly #32 Unigene = 10070
Most representative HarvEST:Barley Assembly #35 Unigene = 17380
HarvEST Unigene 35 Probe Set = Contig12936_at; EBpi01_SQ002_N22_s_at
Unigene 35 Rice Locus = LOC_Os05g34700
Description for best rice BLAST hit to Unigene 35 member = anther-specific proline-rich protein APG, putative, expressed; E value = 1E-116
HarvEST Unigene 35 Probe Set = Contig12936_at, EBpi01_SQ002_N22_s_at
Description for best rice BLAST hit to Unigene 35 member = protein anther-specific proline-rich protein APG, putative, expressed; E value = 1E-116
BLAST hit in the rice genome = anther-specific proline-rich protein APG, putative, expressed

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