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GrainGenes Locus Report: POPA1_0012

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Locus
POPA1_0012  [ Marker Report ]
Type
SNP
Synonym
Other name11_10012
BOPA1_1040-279
BOPA1_11_10012
Synonym11_10012
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, 2012 9KSNP 2H55.9
Hordeum-OPA-2009-2H58.9
Hordeum-OPA123-2008-2H58.9
Hordeum-OPAConsensus-2011-2H67.08
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14266
i_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0012
Marker name in barley OPA1 = 11_10012
Original SNP name = 1040-279
Most representative HarvEST:Barley Assembly #32 Unigene = 1040
Most representative HarvEST:Barley Assembly #35 Unigene = 14266
HarvEST Unigene 35 Probe Set = Contig1559_at; baak12b08_s_at
Unigene 35 Rice Locus = LOC_Os11g24610
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L38, putative, expressed; E value = 9E-33
Original SNP name = OSU_Contig1559_at_82
HarvEST Unigene 35 Probe Set = Contig1559_at, baak12b08_s_at
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L38, putative, expressed; E value = 9E-33
BLAST hit in the rice genome = 60S ribosomal protein L38, putative, expressed