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GrainGenes Locus Report: POPA1_0055

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Locus
POPA1_0055  [ Marker Report ]
Type
SNP
Synonym
Other name11_10055
BOPA1_11_10055
BOPA1_1212-890
Synonym11_10055
Chromosome
7H
Chromosome Arm
7HL
Map
Barley, 2012 9KSNP 7H70.7
Hordeum-OPA-2009-7H79.6
Hordeum-OPA123-2008-7H79.6
Hordeum-OPAConsensus-2011-7H81.78
Hordeum-OWB-OPA2008-7H80.664
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0370P17
Probe
HAR35_14622
i_11_10055
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0055
Marker name in barley OPA1 = 11_10055
Original SNP name = 1212-890
Most representative HarvEST:Barley Assembly #32 Unigene = 1212
Most representative HarvEST:Barley Assembly #35 Unigene = 14622
HarvEST Unigene 35 Probe Set = Contig1807_at
Unigene 35 Rice Locus = LOC_Os03g38000
Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S3, putative, expressed; E value = 1E-122
Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S3, putative, expressed; E value = 1E-122
BLAST hit in the rice genome = 40S ribosomal protein S3, putative, expressed