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GrainGenes Locus Report: POPA1_0065

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Locus
POPA1_0065  [ Marker Report ]
Type
SNP
Synonym
Other name11_10065
BOPA1_11_10065
BOPA1_1250-923
Synonym11_10065
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H130.01
Hordeum-OPA123-2008-2H130.01
Hordeum-OPAConsensus-2011-2H147.37
Hordeum-OWB-OPA2008-2H155.767
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0491I08
Probe
HAR35_13780
i_11_10065
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0065
Marker name in barley OPA1 = 11_10065
Original SNP name = 1250-923
Most representative HarvEST:Barley Assembly #32 Unigene = 1250
Most representative HarvEST:Barley Assembly #35 Unigene = 13780
HarvEST Unigene 35 Probe Set = Contig1861_at
Unigene 35 Rice Locus = LOC_Os04g56180
Description for best rice BLAST hit to Unigene 35 member = peroxidase 16 precursor, putative, expressed; E value = 1E-161
Description for best rice BLAST hit to Unigene 35 member = protein peroxidase 16 precursor, putative, expressed; E value = 1E-161
BLAST hit in the rice genome = peroxidase 16 precursor, putative, expressed