GrainGenes

GrainGenes Locus Report: POPA1_0087

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus	POPA1_0087  [ Marker Report ]
Type	SNP
Probe	HAR35_14869
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Core-2014_3H 24.43 Hordeum-OPA-2009-3H 19.97 Hordeum-OPA123-2008-3H 19.97 Hordeum-OPAConsensus-2011-3H 23.51
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Sequence	HVVMRXALLhA0063F02
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0087 Most representative HarvEST:Barley Assembly #32 Unigene = 1354 Most representative HarvEST:Barley Assembly #35 Unigene = 14869 HarvEST Unigene 35 Probe Set = Contig2007_s_at Unigene 35 Rice Locus = LOC_Os01g04370 Description for best rice BLAST hit to Unigene 35 member = 16.9 kDa class I heat shock protein 1, putative, expressed; E value = 6E-67 Original SNP name = 1354-351 Description for best rice BLAST hit to Unigene 35 member = protein 16.9 kDa class I heat shock protein 1, putative, expressed; E value = 6E-67 BLAST hit in the rice genome = 16.9 kDa class I heat shock protein 1, putative, expressed

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.