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GrainGenes Locus Report: POPA1_0104

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0104  [ Marker Report ]
Type
SNP
Probe
HAR35_658
Synonym
Synonym11_10104
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H146
Hordeum-OPA123-2008-5H146
Hordeum-OPAConsensus-2011-5H141.88
Hordeum-OWB-OPA2008-5H178.303
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0444O18
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0104
Marker name in barley OPA1 = 11_10104
Original SNP name = 1461-529
Most representative HarvEST:Barley Assembly #32 Unigene = 1461
Most representative HarvEST:Barley Assembly #35 Unigene = 658
HarvEST Unigene 35 Probe Set = Contig2129_x_at
Unigene 35 Rice Locus = LOC_Os07g33997
Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L44, putative, expressed; E value = 4E-57
Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L44, putative, expressed; E value = 4E-57
BLAST hit in the rice genome = 60S ribosomal protein L44, putative, expressed

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