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GrainGenes Locus Report: POPA1_0177

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0177  [ Marker Report ]
Type
SNP
Probe
HAR35_15223
i_11_10177
Synonym
Other name11_10177
BOPA1_11_10177
BOPA1_1861-2382
Synonym11_10177
psr161
Chromosome
5H
Chromosome Arm
5HS
Map
Hordeum-OPA-2009-5H51
Hordeum-OPA123-2008-5H51
Hordeum-OPAConsensus-2011-5H42.41
Hordeum-OWB-OPA2008-5H58.35
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0469K22
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0177
Marker name in barley OPA1 = 11_10177
Original SNP name = 1861-2382
Most representative HarvEST:Barley Assembly #32 Unigene = 1861
Most representative HarvEST:Barley Assembly #35 Unigene = 15223
HarvEST Unigene 35 Probe Set = Contig2772_s_at; HF01J12w_s_at
Unigene 35 Rice Locus = LOC_Os12g14070
Description for best rice BLAST hit to Unigene 35 member = stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed; E value = 0
HarvEST Unigene 35 Probe Set = Contig2772_s_at, HF01J12w_s_at
Description for best rice BLAST hit to Unigene 35 member = protein stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed

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