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GrainGenes Locus Report: POPA1_0335

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0335  [ Marker Report ]
Type
SNP
Probe
HAR35_380
i_11_10335
Synonym
Other name11_10335
BOPA1_11_10335
BOPA1_2616-2560
Synonym11_10335
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H58.6
Hordeum-OPA-2009-3H65.52
Hordeum-OPA123-2008-3H65.52
Hordeum-OPAConsensus-2011-3H77.37
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0650N03
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0335
Marker name in barley OPA1 = 11_10335
Original SNP name = 2616-2560
Most representative HarvEST:Barley Assembly #32 Unigene = 2616
Most representative HarvEST:Barley Assembly #35 Unigene = 380
HarvEST Unigene 35 Probe Set = Contig3834_at; Contig3835_at; Contig3835_s_at
Unigene 35 Rice Locus = LOC_Os01g52110
Description for best rice BLAST hit to Unigene 35 member = RING finger and CHY zinc finger domain-containing protein 1, putative, expressed; E value = 1E-152
Original SNP name = ABC01483_1_288
HarvEST Unigene 35 Probe Set = Contig3834_at, Contig3835_at, Contig3835_s_at
Description for best rice BLAST hit to Unigene 35 member = protein RING finger and CHY zinc finger domain-containing protein 1, putative, expressed; E value = 1E-152
BLAST hit in the rice genome = RING finger and CHY zinc finger domain-containing protein 1, putative, expressed

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