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GrainGenes Locus Report: POPA1_0363

[Submit comment/correction] [What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0363  [ Marker Report ]
Type
SNP
Probe
HAR35_15588
i_11_10363
Synonym
Other name11_10363
BOPA1_11_10363
BOPA1_2746-1501
Synonym11_10363
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H138.5
Hordeum-OPA-2009-5H151.36
Hordeum-OPA123-2008-5H151.36
Hordeum-OPAConsensus-2011-5H147.49
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0764E23
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0363
Marker name in barley OPA1 = 11_10363
Original SNP name = 2746-1501
Most representative HarvEST:Barley Assembly #32 Unigene = 2746
Most representative HarvEST:Barley Assembly #35 Unigene = 15588
HarvEST Unigene 35 Probe Set = Contig3924_at
Unigene 35 Rice Locus = LOC_Os03g58070
Description for best rice BLAST hit to Unigene 35 member = hydroxyproline-rich glycoprotein, putative, expressed; E value = 0
Original SNP name = ABC06870_1_371
Description for best rice BLAST hit to Unigene 35 member = protein hydroxyproline-rich glycoprotein, putative, expressed; E value = 0
BLAST hit in the rice genome = hydroxyproline-rich glycoprotein, putative, expressed

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