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GrainGenes Locus Report: POPA1_0422

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Locus
POPA1_0422  [ Marker Report ]
Type
SNP
Synonym
Other name11_10422
BOPA1_11_10422
BOPA1_3122-909
Synonym11_10422
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H52.47
Hordeum-OPA123-2008-2H52.47
Hordeum-OPAConsensus-2011-2H56.64
Hordeum-OWB-OPA2008-2H66.181
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15511
i_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0422
Marker name in barley OPA1 = 11_10422
Original SNP name = 3122-909
Most representative HarvEST:Barley Assembly #32 Unigene = 3122
Most representative HarvEST:Barley Assembly #35 Unigene = 15511
HarvEST Unigene 35 Probe Set = Contig4432_at; HVSMEa0005E13r2_s_at
Unigene 35 Rice Locus = LOC_Os07g43810
Description for best rice BLAST hit to Unigene 35 member = ribonucleoprotein A, chloroplast precursor, putative, expressed; E value = 1E-112
HarvEST Unigene 35 Probe Set = Contig4432_at, HVSMEa0005E13r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ribonucleoprotein A, chloroplast precursor, putative, expressed; E value = 1E-112
BLAST hit in the rice genome = ribonucleoprotein A, chloroplast precursor, putative, expressed